BAC Information

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BAC

Clone NameB6Ng01-345F11
Chromosome3 (Build37)X (Build37)
Map Location 122,368,112 - 122,368,32298,315,141 - 98,315,601
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345F11.bB6Ng01-345F11.g
ACCGA127566GA127567
length211850
definitionB6Ng01-345F11.b B6Ng01-345F11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,368,112 - 122,368,322)(98,315,141 - 98,315,601)
sequence
gaattcaaggaatctcaggataacttacctctgtgatcccagccaaacta
caggggaaaaaaaaaaaagactgagatgagaagccagagggggaaaaaaa
gaagccagagtttcatctcgccttaagttacctccagtgcaagtgtacag
tcaacttttctacttctttccttccttcccaccttccttccttccttcct
tccttccttcc
gaattcctggaaacttggataagagatgtgggagaaggaaaaagctaaaa
tgactacaacgctttagtgctgtttatcagtaagaagaaaaaggatgtgg
gcagactctggaggggaagttcagctttggagcatgctgtgttttcattt
gctagatgtttcatcccttaatgtggggactgtatctgctcttcatttta
taacagattgttcaactaacatcatccaaggtaccagcttaccaatgcgc
tgctcagggaatatctgaaaagagaaaaaatagaactgatacatgctatt
tatactatctttactttttggtttttgtttgttggttgctggttaactgg
ttagttggttggttggttttggggtttggttggtttaatagcacctgctg
ctcttccagagattctgagtttggtggctagcacccatggcagcaggctc
acaaacatctgtaactccagtttcaggggtgttgatgcttctggcctctg
tgggcacctgccctcaggcgcgcgcgcgcgcgcgcgcgcgcgtacacaca
ctcacatacacacacatacacacacacacacacacacacacacacataca
cacacacaccacacactcaaattttttttaaaagaaagagaaatgtgcat
cttttaagtccattaaataaataattactatcattgtgctttttccttga
atcaactaaattctttttagctaaattaaattgtgtttttttcttttgta
atcaacagtcttataagacaggtctgcagttagtttccttttctttcctc
tttgctcagtgaatttctgatcttcaattttctagtggtactactctgat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122368112_122368322
seq2: B6Ng01-345F11.b_47_257

seq1  GAATTCAAGGAATCTCAGGATAACTTACCTCTGTGATCCCAGCCAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAATCTCAGGATAACTTACCTCTGTGATCCCAGCCAAACTA  50

seq1  CAGGGGAAAAAAAAAAAAGACTGAGATGAGAAGCCAGAGGGGGAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAAAAAAAAAAAGACTGAGATGAGAAGCCAGAGGGGGAAAAAAA  100

seq1  GAAGCCAGAGTTTCATCTCGCCTTAAGTTACCTCCAGTGCAAGTGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGAGTTTCATCTCGCCTTAAGTTACCTCCAGTGCAAGTGTACAG  150

seq1  TCAACTTTTCTACTTCTTTCCTTCCTTCCCACCTTCCTTCCTTCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTCTACTTCTTTCCTTCCTTCCCACCTTCCTTCCTTCCTTCCT  200

seq1  TCCTTCCTTCC  211
      |||||||||||
seq2  TCCTTCCTTCC  211

seq1: chrX_98315141_98315601
seq2: B6Ng01-345F11.g_450_915 (reverse)

seq1  AACAGAGTAGTACCACTAGAATGTTGGAGATCAG-AATTCATTGAACAAG  49
      | |||||||||||||||||||  ||| ||||||| |||||| ||| ||| 
seq2  ATCAGAGTAGTACCACTAGAAAATTGAAGATCAGAAATTCACTGAGCAAA  50

seq1  GAGGAAAGAAAAAGGAAACTAACTGCAGACCTGTCTTCTGAGACTGTAGA  99
      |||||||| |||||||||||||||||||||||||||| | ||||||| ||
seq2  GAGGAAAG-AAAAGGAAACTAACTGCAGACCTGTCTTATAAGACTGTTGA  99

seq1  TTACAAAAG-AAAAAACACAATTAAATTTAGCTAAAAAGAATTTAGTTGA  148
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TTACAAAAGAAAAAAACACAATTTAATTTAGCTAAAAAGAATTTAGTTGA  149

seq1  TTCA--GGAAAAGCAAAATGATAGTAATTATTTATTTAATGGACTT-AAA  195
      ||||  | ||||||| |||||||||||||||||||||||||||||| |||
seq2  TTCAAGGAAAAAGCACAATGATAGTAATTATTTATTTAATGGACTTAAAA  199

seq1  GATGCACATTTCTCTTTCTTTT-AAAAAGATTTGAGTGTGTGGTGTGTGT  244
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GATGCACATTTCTCTTTCTTTTAAAAAAAATTTGAGTGTGTGGTGTGTGT  249

seq1  GTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  294
      |||||||||||||||||||||||||||||||||| ||||||||| |||| 
seq2  GTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGA  299

seq1  GTGTGTGTGCGCGCGCGCGCGCGCGCGCGCGCGCCTGAGGGCAGGTGCCC  344
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTACGCGCGCGCGCGCGCGCGCGCGCGCCTGAGGGCAGGTGCCC  349

seq1  ACAGAGGCCAGAAGCATCAACACCCCTGAAACTGGAGTTACAGATGTTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCCAGAAGCATCAACACCCCTGAAACTGGAGTTACAGATGTTTG  399

seq1  TGAGCCTGCTGCCATGGGTGCTAGCCACCAAACTCAGAATCTCTGGAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCTGCCATGGGTGCTAGCCACCAAACTCAGAATCTCTGGAAGA  449

seq1  GCAGCAGGTGCTCTTAA  461
      |||||||||||| ||||
seq2  GCAGCAGGTGCTATTAA  466