BAC Information

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BAC

Clone NameB6Ng01-345M02
Chromosome3 (Build37)
Map Location 113,869,191 - 113,870,299
singlet/doubletsinglet
Overlap geneCol11a1
Upstream geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M02.bB6Ng01-345M02.g
ACCGA127849GA127850
length1,1761,106
definitionB6Ng01-345M02.b B6Ng01-345M02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttagctctgaggcccatttttaatggggttatttcattt
tctgtagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttgggtgtctt
ttgccttacagaagctttgtagtgttatgcagtcacatttgtcaattctc
gatcttatagcacaagccattgctgttctattcaggaatttttcccctgt
gcccatatctccgaggctttcccctactctctcctctataagtttcactg
tctctcattttatgtggagttctttgatccaattagatttgacattagta
cagggagataggaatggatcaattcccattcttctacaggataaccgcca
gttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatgg
ttttagctcccttgtcgaagatcaagtgaccataggtgtgtggattcatt
tctgggtctttaattctattccattggtctacttctctgtccctatacca
gttccatgcagtttttaatcactattgctctgtagtacagctttaggtca
ggcatggtaattccaccagaggtgcttttatccttgaggagagttttttg
ctatcctaggttttttgttattccagatgaatctgcacatttcactttct
aatttgttgaattgagttggaattttgatggggattacattgaatctgaa
gatttcttttggcaaaatagccatttttactatattgatcctgccaatcc
atgagcatgggagatctttccatcttctgagatcttctttaatttctttc
ttcaaagacttgaagtttttatcatacagagttttcacttccttacttag
agtcacaccaagttactttatattatttgtgactattgagaagtgtgttg
tttccctaatttctctctcagatattatcctttgtgtagagaaaggccat
tgacttgttgagttaattttattatcagctacatcactgagctgtttatc
agttttaggagttctctggtgatttttagatcattaattaatactatcat
atcatctgcgaaagagaatattgactctcgttcagttttattccgttatc
tcctttgtgtgtgtgcgaaaatgtgc
gaattctcttgattttccttttacaaatgactttatctcctggaaagttg
acaaagatgtaaaaagaataatacgtgactctatgtatggattagttcat
acaagaaaaatcatggaatgcttatgtatggatggctcataatacctatg
aaatcaattgttcaaaataatcgtaagcactgaaatgcataacacatgcg
tatgcacagaaattcttaattttcatatgtcaatatattctatgaacagc
atataagaatcctgttgataatttaagcaaaatttttcatgtggtcctga
tataaaatcactacagaaatctaattttaaaaaatttaaaaaaataagtc
ttgataatggtttatgttagtagaagaatgtattcttagatatgtataac
attcagatgtggagtgttttcgtgttttaataaataccaatttaagcttg
gattacataaacatgacatacatatgaaactatatgtctgtaggaaataa
aatacttgatagttgctaaagtaattacaaagccgactaaataatattgc
tttatttccaaaggagtacagatgcttaataagtcttggtcagccattat
atttttgttttggggttttttgtttgtttgtttgtttttgtttttaattt
agctgatattttgaagccctgcttttaagatttctgacttgtatgtcact
tcagggtcctcctggtccccccggacttcaaggacctgttggtgctcctg
gaatcgctgtaagcattcttacctctttattctataaacttaggtacttt
tagtgccttccttaaatgtatgaactgttagttatatatatctagatgat
gttgtgtgtaaataattttacttgtatgctaaacagtgacccaatgtagg
tagctataattttcataatgataacttataataagaaacagaggaacatc
gctaataccaatgaatttgaacattatttgtcaactggaccatatttact
ttatttgggtatgaccaaataaatttcataactccagaaaacaagcatgc
ttgtgaggcaaaacactggcgtattgccagacgacattgacaacctgaat
ctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113869191_113870299
seq2: B6Ng01-345M02.g_69_1174

seq1  GAATTCTCTTGATTTTCCTTTTACAAATGACTTTATCTCCTGGAAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGATTTTCCTTTTACAAATGACTTTATCTCCTGGAAAGTTG  50

seq1  ACAAAGATGTAAAAAGAATAATACGTGACTCTATGTATGGATTAGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGTAAAAAGAATAATACGTGACTCTATGTATGGATTAGTTCAT  100

seq1  ACAAGAAAAATCATGGAATGCTTATGTATGGATGGCTCATAATACCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAATCATGGAATGCTTATGTATGGATGGCTCATAATACCTATG  150

seq1  AAATCAATTGTTCAAAATAATCGTAAGCACTGAAATGCATAACACATGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTGTTCAAAATAATCGTAAGCACTGAAATGCATAACACATGCG  200

seq1  TATGCACAGAAATTCTTAATTTTCATATGTCAATATATTCTATGAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAGAAATTCTTAATTTTCATATGTCAATATATTCTATGAACAGC  250

seq1  ATATAAGAATCCTGTTGATAATTTAAGCAAAATTTTTCATGTGGTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATCCTGTTGATAATTTAAGCAAAATTTTTCATGTGGTCCTGA  300

seq1  TATAAAATCACTACAGAAATCTAATTTTAAAAAATTTAAAAAAATAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCACTACAGAAATCTAATTTTAAAAAATTTAAAAAAATAAGTC  350

seq1  TTGATAATGGTTTATGTTAGTAGAAGAATGTATTCTTAGATATGTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATGGTTTATGTTAGTAGAAGAATGTATTCTTAGATATGTATAAC  400

seq1  ATTCAGATGTGGAGTGTTTTCGTGTTTTAATAAATACCAATTTAAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATGTGGAGTGTTTTCGTGTTTTAATAAATACCAATTTAAGCTTG  450

seq1  GATTACATAAACATGACATACATATGAAACTATATGTCTGTAGGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATAAACATGACATACATATGAAACTATATGTCTGTAGGAAATAA  500

seq1  AATACTTGATAGTTGCTAAAGTAATTACAAAGCCGACTAAATAATATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGATAGTTGCTAAAGTAATTACAAAGCCGACTAAATAATATTGC  550

seq1  TTTATTTCCAAAGGAGTACAGATGCTTAATAAGTCTTGGTCAGCCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCAAAGGAGTACAGATGCTTAATAAGTCTTGGTCAGCCATTAT  600

seq1  ATTTTTGTTTTGGGGTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTGGGGTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTAATTT  650

seq1  AGCTGATATTTTGAAGCCCTGCTTTTAAGATTTCTGACTTGTATGTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATATTTTGAAGCCCTGCTTTTAAGATTTCTGACTTGTATGTCACT  700

seq1  TCAGGGTCCTCCTGGTCCCCCCGGACTTCAAGGACCTGTTGGTGCTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCTCCTGGTCCCCCCGGACTTCAAGGACCTGTTGGTGCTCCTG  750

seq1  GAATCGCTGTAAGCATTCTTACCTCTTTATTCTATAAACTTAGGTACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGCTGTAAGCATTCTTACCTCTTTATTCTATAAACTTAGGTACTTT  800

seq1  TAGTGCCTTCCTTAAATGTATGAACTGTTAGTTATATATATCTAGATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTTCCTTAAATGTATGAACTGTTAGTTATATATATCTAGATGAT  850

seq1  GTTGTGTGTAAATAATTTTACTTGTATGCTAAACAGTGACCCAATGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGTAAATAATTTTACTTGTATGCTAAACAGTGACCCAATGTAGG  900

seq1  TAGCTATAATTTTCATAATGATAACTTATAAATAAGAAACAGAGGAACAT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGCTATAATTTTCATAATGATAACTTAT-AATAAGAAACAGAGGAACAT  949

seq1  CGCTTAATACCCAATGAATTTGAACATTATTTGTCAACTGGACCATATTT  1000
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGC-TAATA-CCAATGAATTTGAACATTATTTGTCAACTGGACCATATTT  997

seq1  ACTTTATTT-GGTATGACCAAATAAATTCAATTAAACTCCAGAAACAAGG  1049
      ||||||||| ||||||||||||||||||  ||  |||||||||||  | |
seq2  ACTTTATTTGGGTATGACCAAATAAATTTCAT--AACTCCAGAAAACAAG  1045

seq1  AATGCTTGTGAAGCAAAACACTGGCGTATTTGCAGACGACAATGACAA-C  1098
       |||||||||| ||||||||||||||||||  ||||||||| |||||| |
seq2  CATGCTTGTGAGGCAAAACACTGGCGTATTGCCAGACGACATTGACAACC  1095

seq1  TGAGTCTGTTT  1109
      ||| |||||||
seq2  TGAATCTGTTT  1106