BAC Information

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BAC

Clone NameB6Ng01-345N12
Chromosome3 (Build37)
Map Location 114,369,016 - 114,496,580
singlet/doubletdoublet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N12.bB6Ng01-345N12.g
ACCGA127913GA127914
length1,1261,073
definitionB6Ng01-345N12.b B6Ng01-345N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,369,016 - 114,370,132)(114,495,495 - 114,496,580)
sequence
gaattctgtctagatttgtaacttttttgagttgtctctctctctctcat
atatatatatatatatatatatatatatatatatatatatatatgagaca
tcattaggtcactgtcgaatatgggtgttggtgaaaatcttttctcattc
tgtaggctacaactttgtccaaaggatgccgtcctttgacttgtagaaga
gttttagtttcaccagattccatttattatggtcttagtgcctgttctaa
tggtgttctgatcagaaagtcttttcctgtgccagtgagttgaagcccac
ttcccttggggctcaaggaatcctgctgaagagaaagaaaaagggtgtaa
gagccaaaataaatggaggaaacaaagaaaacaaggtccactaaatcaac
atgaaccaagctcatgtgagctcacatagactgagggagcatgcacaagg
cttacaacaggatggccccttgggtggaatttgtaaggcaaatcctagag
aagagtgtcttataaagtataagaatgatacaaattcttttctattgtct
attgtgtactaaggaaaacaattatagaggattctttttaaaacctgaaa
aacaaaagtacattgaggacagaacctgcatactttcagagtttatacaa
gcctagaagttagtttgtacaagttagaaagtttataacaggttccttcc
agtctgcaccagtctaccttgggcacagactcagctgaaagtcccatagc
caccagaggtgtctccattcccaggtgctctagcatgcccagaatcttag
gatcacaagtgagtagagcacaacatctgttacaataccacaggtagtga
ctatgaccagcaggatactggaaaataggaaccctgctcaggttccttca
ggtttggtgcctgtataccttgggtaacaaacttccaacaaacagtccca
cagtcttcagaaggaggttatcactctcagcactctagcacacccaggat
tctaagaatccaaggatccagagttgtcacatcagattctcagggtctca
gaagcagcttgaactcccagaaactctggacacacttcagggccaagagc
actttgaaattattacgaatggtagc

gaattcatgcagtgatactaaaatttggggacagaaagcaaaatattaga
tatgaagcacctattacatactgaacaattaaatagttttcatagcttta
gaagcacgatactaaaatgatagctttgtctagttaaatataaacaaccc
aattaaactgcaagacattcatcttgaataaagctaagagaactacaaaa
atatgaaggcacattggacaaaatgagtagaccttactttcagcattaac
atagagtacccaatgatgtcctttgcttccaaggctaagagtcagtgctt
gatgatgatgataatgatgatgacgacgacgatggtgatgaaattctttt
atttatttaatttccaaaagttccccccttcacagccctcctctccatag
tcatcaccccatctcccttttacccagcctctgagagggtgcttttcttc
tcccacccaccctcaactcaatcctaccagcgtccctcatccctggggca
gcaagttttcacagaattaagtttatcctctcccactgaggtcattcttg
agaattcttctcattgtataatttttatcatgctatgggagtagaacttg
gtgtcgttcagatgcaaggacaatctatccataagaagtataatatttgc
tacatctctatgccatgggaagctgttgcaagctatagccaaccattaga
gactctgggtgctaataatggtgcaggccactcaatctagcacctagaaa
attgcttgtgcaccagaaacctccaaagtataatcaataaggaaaatcct
tttcttctgtcacatatagccagccctctactgagaactgacacagggaa
atttttccatctcagatccagagttcctttgtgaagtgtaaatctataga
tatctgctattgttagtattgtattcttttttttttaaagcactggtaat
cctttatttattttgcattttgtatttcttattacattcaaatgtatcct
ttcctggttccctagaaaattccccattcccttccccttccccctgcttc
tatgaaggtgtttctctggcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114369016_114370132
seq2: B6Ng01-345N12.b_46_1171

seq1  GAATTCTGTCTAGATTTGTAACTTTTTTGAGTTGTCTCTCTCTCTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTAGATTTGTAACTTTTTTGAGTTGTCTCTCTCTCTCTCAT  50

seq1  ATATATATATATATATATATATATATATATATATATATATATATGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATGAGACA  100

seq1  TCATTAGGTCACTGTCGAATATGGGTGTTGGTGAAAATCTTTTCTCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGTCACTGTCGAATATGGGTGTTGGTGAAAATCTTTTCTCATTC  150

seq1  TGTAGGCTACAACTTTGTCCAAAGGATGCCGTCCTTTGACTTGTAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTACAACTTTGTCCAAAGGATGCCGTCCTTTGACTTGTAGAAGA  200

seq1  GTTTTAGTTTCACCAGATTCCATTTATTATGGTCTTAGTGCCTGTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTTCACCAGATTCCATTTATTATGGTCTTAGTGCCTGTTCTAA  250

seq1  TGGTGTTCTGATCAGAAAGTCTTTTCCTGTGCCAGTGAGTTGAAGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTGATCAGAAAGTCTTTTCCTGTGCCAGTGAGTTGAAGCCCAC  300

seq1  TTCCCTTGGGGCTCAAGGAATCCTGCTGAAGAGAAAGAAAAAGGGTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGGGGCTCAAGGAATCCTGCTGAAGAGAAAGAAAAAGGGTGTAA  350

seq1  GAGCCAAAATAAATGGAGGAAACAAAGAAAACAAGGTCCACTAAATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAATAAATGGAGGAAACAAAGAAAACAAGGTCCACTAAATCAAC  400

seq1  ATGAACCAAGCTCATGTGAGCTCACATAGACTGAGGGAGCATGCACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAAGCTCATGTGAGCTCACATAGACTGAGGGAGCATGCACAAGG  450

seq1  CTTACAACAGGATGGCCCCTTGGGTGGAATTTGTAAGGCAAATCCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACAGGATGGCCCCTTGGGTGGAATTTGTAAGGCAAATCCTAGAG  500

seq1  AAGAGTGTCTTATAAAGTATAAGAATGATACAAATTCTTTTCTATTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTCTTATAAAGTATAAGAATGATACAAATTCTTTTCTATTGTCT  550

seq1  ATTGTGTACTAAGGAAAACAATTATAGAGGATTCTTTTTAAAACCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTACTAAGGAAAACAATTATAGAGGATTCTTTTTAAAACCTGAAA  600

seq1  AACAAAAGTACATTGAGGACAGAACCTGCATACTTTCAGAGTTTATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTACATTGAGGACAGAACCTGCATACTTTCAGAGTTTATACAA  650

seq1  GCCTAGAAGTTAGTTTGTACAAGTTAGAAAGTTTATAACAGGTTCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAGTTAGTTTGTACAAGTTAGAAAGTTTATAACAGGTTCCTTCC  700

seq1  AGTCTGCACCAGTCTACCTTGGGCACAGACTCAGCTGAAAGTCCCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCACCAGTCTACCTTGGGCACAGACTCAGCTGAAAGTCCCATAGC  750

seq1  CACCAGAGGTGTCTCCATTCCCAGGTGCTCTAGCATGCCCAGAATCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGGTGTCTCCATTCCCAGGTGCTCTAGCATGCCCAGAATCTTAG  800

seq1  GATCACAAGTGAGTAGAGCACAACATCTGTTACAATACCACAGGTAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAAGTGAGTAGAGCACAACATCTGTTACAATACCACAGGTAGTGA  850

seq1  CTATGACCAGCAGGATACTGGAAAATAGGAACCCTGCTCAGGTTCCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCAGCAGGATACTGGAAAATAGGAACCCTGCTCAGGTTCCTTCA  900

seq1  GGTTT-GTGCCTGTATACCTTGGGT-ACAAACT--CCACAAACAGTCCCA  946
      ||||| ||||||||||||||||||| |||||||  | |||||||||||||
seq2  GGTTTGGTGCCTGTATACCTTGGGTAACAAACTTCCAACAAACAGTCCCA  950

seq1  CAGTCTTCAG-AGGAGG-TATCACTCTCAGGCACTCTAGCACACCCAGGA  994
      |||||||||| |||||| ||||||||||| ||||||||||||||||||||
seq2  CAGTCTTCAGAAGGAGGTTATCACTCTCA-GCACTCTAGCACACCCAGGA  999

seq1  -TCTAAGAATCCAAGGATCCCAAGAGGTTGGTCACATCAGGATCTCAGGG  1043
       |||||||||||||||||||  ||||  | ||||||||||  ||||||||
seq2  TTCTAAGAATCCAAGGATCC--AGAG--TTGTCACATCAGATTCTCAGGG  1045

seq1  TCTCAGAGGCAGCTTG-ACTCCCAGAAACTCTG---ACACTCAAGGGCAA  1089
      ||||||| |||||||| ||||||||||||||||   |||||  ||||| |
seq2  TCTCAGAAGCAGCTTGAACTCCCAGAAACTCTGGACACACTTCAGGGCCA  1095

seq1  GGAGCAC-TTGAAATAAT--CAGATGGTAGC  1117
       |||||| ||||||| ||  |  ||||||||
seq2  AGAGCACTTTGAAATTATTACGAATGGTAGC  1126


seq1: chr3_114495495_114496580
seq2: B6Ng01-345N12.g_67_1139 (reverse)

seq1  GAAGCCAGGAGGAAACACCCTCATAGAAGCAGGGGGAAGGGG-AGGGAAT  49
      ||||||||   |||||||| |||||||||||||||||||||| |||||||
seq2  GAAGCCAG--AGAAACACCTTCATAGAAGCAGGGGGAAGGGGAAGGGAAT  48

seq1  GGGGGATTTTCTTAGGGGAAACCAGGAAAAGGGATAACATTTGAAATGTA  99
      |||| |||||| |||||  ||||||||||  |||| ||||||| ||||||
seq2  GGGGAATTTTC-TAGGG--AACCAGGAAA--GGAT-ACATTTG-AATGTA  91

seq1  AATAAAGAAATTAACAAAATGCAAAAATAAAATAAAAGGATTACCAGTGC  149
      |   |||||||  ||||||||| ||||||||   ||||||||||||||||
seq2  A--TAAGAAAT--ACAAAATGC-AAAATAAA--TAAAGGATTACCAGTGC  134

seq1  TTTAAAAAAAAAAGAATACAATACTAACAATAGCAGATATCTATAGATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAAGAATACAATACTAACAATAGCAGATATCTATAGATTT  184

seq1  ACACTTCAC-AAGGAACTCTGGATCTGAGATGGAAAAA-TTCCCTGTGTC  247
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  ACACTTCACAAAGGAACTCTGGATCTGAGATGGAAAAATTTCCCTGTGTC  234

seq1  AGTTCTCAGTAGAGGGCTGGCTATATGTGACAGAAGAAAAGGATTTTCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGTAGAGGGCTGGCTATATGTGACAGAAGAAAAGGATTTTCCT  284

seq1  TATTGATTATACTTTGGAGGTTTCTGGTGCACAAGCAATTTTCTAGGTGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTATACTTTGGAGGTTTCTGGTGCACAAGCAATTTTCTAGGTGC  334

seq1  TAGATTGAGTGGCCTGCACCATTATTAGCACCCAGAGTCTCTAATGGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGAGTGGCCTGCACCATTATTAGCACCCAGAGTCTCTAATGGTTG  384

seq1  GCTATAGCTTGCAACAGCTTCCCATGGCATAGAGATGTAGCAAATATTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCTTGCAACAGCTTCCCATGGCATAGAGATGTAGCAAATATTAT  434

seq1  ACTTCTTATGGATAGATTGTCCTTGCATCTGAACGACACCAAGTTCTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTATGGATAGATTGTCCTTGCATCTGAACGACACCAAGTTCTACT  484

seq1  CCCATAGCATGATAAAAATTATACAATGAGAAGAATTCTCAAGAATGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCATGATAAAAATTATACAATGAGAAGAATTCTCAAGAATGACC  534

seq1  TCAGTGGGAGAGGATAAACTTAATTCTGTGAAAACTTGCTGCCCCAGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGAGAGGATAAACTTAATTCTGTGAAAACTTGCTGCCCCAGGGA  584

seq1  TGAGGGACGCTGGTAGGATTGAGTTGAGGGTGGGTGGGAGAAGAAAAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACGCTGGTAGGATTGAGTTGAGGGTGGGTGGGAGAAGAAAAGCA  634

seq1  CCCTCTCAGAGGCTGGGTAAAAGGGAGATGGGGTGATGACTATGGAGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGAGGCTGGGTAAAAGGGAGATGGGGTGATGACTATGGAGAGG  684

seq1  AGGGCTGTGAAGGGGGGAACTTTTGGAAATTAAATAAATAAAAGAATTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGAAGGGGGGAACTTTTGGAAATTAAATAAATAAAAGAATTTC  734

seq1  ATCACCATCGTCGTCGTCATCATCATTATCATCATCATCAAGCACTGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATCGTCGTCGTCATCATCATTATCATCATCATCAAGCACTGACT  784

seq1  CTTAGCCTTGGAAGCAAAGGACATCATTGGGTACTCTATGTTAATGCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTTGGAAGCAAAGGACATCATTGGGTACTCTATGTTAATGCTGA  834

seq1  AAGTAAGGTCTACTCATTTTGTCCAATGTGCCTTCATATTTTTGTAGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTCTACTCATTTTGTCCAATGTGCCTTCATATTTTTGTAGTTC  884

seq1  TCTTAGCTTTATTCAAGATGAATGTCTTGCAGTTTAATTGGGTTGTTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTTTATTCAAGATGAATGTCTTGCAGTTTAATTGGGTTGTTTAT  934

seq1  ATTTAACTAGACAAAGCTATCATTTTAGTATCGTGCTTCTAAAGCTATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTAGACAAAGCTATCATTTTAGTATCGTGCTTCTAAAGCTATGA  984

seq1  AAACTATTTAATTGTTCAGTATGTAATAGGTGCTTCATATCTAATATTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTTAATTGTTCAGTATGTAATAGGTGCTTCATATCTAATATTTT  1034

seq1  GCTTTCTGTCCCCAAATTTTAGTATCACTGCATGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTCCCCAAATTTTAGTATCACTGCATGAATTC  1073


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