BAC Information

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BAC

Clone NameB6Ng01-346G14
Chromosome3 (Build37)
Map Location 49,477,691 - 49,610,713
singlet/doubletdoublet
Overlap genePcdh18
Upstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346G14.bB6Ng01-346G14.g
ACCGA128318GA128319
length3441,147
definitionB6Ng01-346G14.b B6Ng01-346G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,610,370 - 49,610,713)(49,477,691 - 49,478,856)
sequence
gtctctagcaaccactcagctgaaggagaactgacttctgcatgtgcgca
accacctctgtctacacgctatcttatgcatccttgtacacacgtgcaca
cacacatatgcaaacatgtacacaataaataagatgtaatgattcctttt
aaagatacagcaggaatggaaagatagttaagttggtaaagtattttctg
aaccatcaatcatgaatttggatacctagcacccacatgaaacactgaat
gtgccagttagagcagacaagaggcaggtggcttatactgggtttgcatt
tccttaagcaaggtcagggatactctgtaattaatttgtacaaa

gaattctgacaaagtgaacatatccacaacagggtagggcttactcatct
atgtctaccctgtatggagaaactcgctcatcacaattttggtttcccat
gatgctctcaatttagtatcttctttccagacattggagcctcccaattg
ttccctaccgtctccacttctgcctttttctcttttctcttttcacatgg
aggtaagcactggtgataccctaccttaccgaacctccctgcctccttcc
atcccttctctctgtagccttgaaggtagttctgattgtctgcaaacaga
ttgttcttctggtatttacccatactttctattttctcacctatcacagg
agcactgtaagagtaatgcaatatataagtaggagcttgtatgtgcgttg
catgtctttacgaaaactcaattattattttacaattgatcagttacagt
ttataattgtaactacctaccattcccacaacatcaacatcaaaatgatt
atttgaatcatttcactttttactttcaaatgtagaaaataaatatcaga
atataagaatacaataaataagtgcattaagacctttcagttcaaaatag
gtgacaaaatttcatctttgaaattcacatataaaggtatcttactgtga
cccaaggacccttagaagaagtctttgttttccacaagtaaaccatcata
ttactattaaatctgagaacatgccgcaaaagcaattttgttggtaacat
aaagtagtcctgaatctgggctatactgtgtgactcatattcattgatgt
tatgtgttagggaataggcatgatagcaagaagtgcctacccagtgctca
agactaactcaaagtataacatatggcacagagcaggcaggcgcagcaag
aaacaccttggagtcattaattttttatttaatgtttgtttactctgcat
tctgaaacctttctcataatcaattttctgaaatcctacagttagttaaa
tagtccaatgtgattacagttcacaattctagacgtttggggctggcata
taatagctagaaaaacatattcagaaagctatcatgaaatttcatttaga
tcttatatctggtttcagtaccccaaatgtcaatagttttagtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49610370_49610713
seq2: B6Ng01-346G14.b_57_400 (reverse)

seq1  TTTGTACAAATTAATTACAGAGTCTCCCTGACCTTGCTTAAGGAAATGCA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTACAAATTAATTACAGAGTATCCCTGACCTTGCTTAAGGAAATGCA  50

seq1  AACCCAGTATAAGCCACCTGCCTCTTGTCTGCTCTAACTGGCACATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGTATAAGCCACCTGCCTCTTGTCTGCTCTAACTGGCACATTCAG  100

seq1  TGTTTCATGTGGGTGCTAGGTATCCAAATTCATGATTGATGGTTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGTGGGTGCTAGGTATCCAAATTCATGATTGATGGTTCAGAAA  150

seq1  ATACTTTACCAACTTAACTATCTTTCCATTCCTGCTGTATCTTTAAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTACCAACTTAACTATCTTTCCATTCCTGCTGTATCTTTAAAAGG  200

seq1  AATCATTACATCTTATTTATTGTGTACATGTTTGCATATGTGTGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTACATCTTATTTATTGTGTACATGTTTGCATATGTGTGTGTGCA  250

seq1  CGTGTGTACAAGGATGCATAAGATAGCGTGTAGACAGAGGTGGTTGCGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTACAAGGATGCATAAGATAGCGTGTAGACAGAGGTGGTTGCGCA  300

seq1  CATGCAGAAGTCAGTTCTCCTTCAGCTGAGTGGTTGCTAGAGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAAGTCAGTTCTCCTTCAGCTGAGTGGTTGCTAGAGAC  344


seq1: chr3_49477691_49478856
seq2: B6Ng01-346G14.g_69_1215

seq1  GAATTCTGACAAAGTGAACATATCCACAACAGGGTAGGGCTTACTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAAAGTGAACATATCCACAACAGGGTAGGGCTTACTCATCT  50

seq1  ATGTCTACCCTGTATGGAGAAACTCGCTCATCACAATTTTGGTTTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCCTGTATGGAGAAACTCGCTCATCACAATTTTGGTTTCCCAT  100

seq1  GATGCTCTCAATTTAGTATCTTCTTTCCAGACATTGGAGCCTCCCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTCAATTTAGTATCTTCTTTCCAGACATTGGAGCCTCCCAATTG  150

seq1  TTCCCTACCGTCTCCACTTCTGCCTTTTTCTCTTTTCTCTTTTCACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCGTCTCCACTTCTGCCTTTTTCTCTTTTCTCTTTTCACATGG  200

seq1  AGGTAAGCACTGGTGATACCCTACCTTACCGAACCTCCCTGCCTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCACTGGTGATACCCTACCTTACCGAACCTCCCTGCCTCCTTCC  250

seq1  ATCCCTTCTCTCTGTAGCCTTGAAGGTAGTTCTGATTGTCTGCAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTCTCTGTAGCCTTGAAGGTAGTTCTGATTGTCTGCAAACAGA  300

seq1  TTGTTCTTCTGGTATTTACCCATACTTTCTATTTTCTCACCTATCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTGGTATTTACCCATACTTTCTATTTTCTCACCTATCACAGG  350

seq1  AGCACTGTAAGAGTAATGCAATATATAAGTAGGAGCTTGTATGTGCGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTAAGAGTAATGCAATATATAAGTAGGAGCTTGTATGTGCGTTG  400

seq1  CATGTCTTTACGAAAACTCAATTATTATTTTACAATTGATCAGTTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTACGAAAACTCAATTATTATTTTACAATTGATCAGTTACAGT  450

seq1  TTATAATTGTAACTACCTACCATTCCCACAACATCAACATCAAAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTAACTACCTACCATTCCCACAACATCAACATCAAAATGATT  500

seq1  ATTTGAATCATTTCACTTTTTACTTTCAAATGTAGAAAATAAATATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCATTTCACTTTTTACTTTCAAATGTAGAAAATAAATATCAGA  550

seq1  ATATAAGAATACAATAAATAAGTGCATTAAGACCTTTCAGTTCAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATACAATAAATAAGTGCATTAAGACCTTTCAGTTCAAAATAG  600

seq1  GTGACAAAATTTCATCTTTGAAATTCACATATAAAGGTATCTTACTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAATTTCATCTTTGAAATTCACATATAAAGGTATCTTACTGTGA  650

seq1  CCCAAGGACCCTTAGAAGAAGTCTTTGTTTTCCACAAGTAAACCATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACCCTTAGAAGAAGTCTTTGTTTTCCACAAGTAAACCATCATA  700

seq1  TTACTATTAAATCTGAGAACATGCCGCAAAAGCAATTTTGTTGGTAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTAAATCTGAGAACATGCCGCAAAAGCAATTTTGTTGGTAACAT  750

seq1  AAAGTAGTCCTGAATCTGGGCTATACTGTGTGACTCATATTCATTGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTCCTGAATCTGGGCTATACTGTGTGACTCATATTCATTGATGT  800

seq1  TATGTGTTAGGGAATAGGCATGATAGCAAGAAGTGCCTACCCAGTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTAGGGAATAGGCATGATAGCAAGAAGTGCCTACCCAGTGCTCA  850

seq1  AGACTAACTCAAAGTATAACATATGGCACAGAGCAGGCAGGCGCAGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACTCAAAGTATAACATATGGCACAGAGCAGGCAGGCGCAGCAAG  900

seq1  AAACACCTTGGAGTCATTAATTTTTTATTTAATGTTTGTTTACTCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTTGGAGTCATTAATTTTTTATTTAATGTTTGTTTACTCTGCAT  950

seq1  TCTGAAACCTTTCTTCATAATCAAAATTTTCTGAAATCCTACAGTTAGTT  1000
      ||||||||||||| ||||||||  ||||||||||||||||||||||||||
seq2  TCTGAAACCTTTC-TCATAATC--AATTTTCTGAAATCCTACAGTTAGTT  997

seq1  AAATAGTCCAATGTGGAATTACAGTCCACAATTCTAGACG-TTGGGGCTG  1049
      |||||||||||||||  |||||||| |||||||||||||| |||||||||
seq2  AAATAGTCCAATGTG--ATTACAGTTCACAATTCTAGACGTTTGGGGCTG  1045

seq1  GCATTATTAAATAGCTAGAAAACATTAATCAAGACAGCCTATCATTGGAC  1099
      ||| |||  |||||||||||||   || || ||| || |||||||  || 
seq2  GCA-TAT--AATAGCTAGAAAAACATATTC-AGAAAG-CTATCAT--GAA  1088

seq1  ATTTTCAATTTAGATCTTAATTATCTGTTTTCAGGTACCCCCAAAATGTC  1149
      ||||   ||||||||||||  |||||| ||||| |||||||  |||||||
seq2  ATTT--CATTTAGATCTTA--TATCTGGTTTCA-GTACCCC--AAATGTC  1131

seq1  AATAATTTTTAGTGCAA  1166
      ||| | ||||||||| |
seq2  AAT-AGTTTTAGTGCCA  1147


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