BAC Information

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BAC

Clone NameB6Ng01-346N24
Chromosome3 (Build37)
Map Location 88,638,703 - 88,757,422
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3
Upstream geneSh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346N24.bB6Ng01-346N24.g
ACCGA128650GA128651
length532440
definitionB6Ng01-346N24.b B6Ng01-346N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,638,703 - 88,639,240)(88,756,977 - 88,757,422)
sequence
tccttttcttcctatgttccaagtattttgtggggagggtgattagttgt
caacttacgctatggaaactatggattccccacccccaggttttgagttt
ggtcggtaactagagaagagtaggaagactcccccaacccttgccttcct
ccctccttccctttctttcattctttttctttgtttccgagacagggttt
ctgtgtgtggccatggccgtcctaaagctcgtcctgtagactagcctggc
ctcgaaatcaggcctacgtctgcctcctcctcatccatctatttgtcatg
tgttgggttactttttccatgaactgacgtaccagggctgtggcttcacc
aggccctaaaacatgatggcgccgatcatctggcgcatgctccttgacgc
ggaggtcccgcgcatcgggggcgcgcacgtcagccggtgccgttgcgtta
cttccgctggtgcaggagctgagtttccgcgggatcagagcgggcctctg
agggtatttggtagtgtgtggtggggcgggaa
ctacagtccagccaagacgttccaatatccaaaggcacatatcaataatt
tacagatcccaaaaacagtttactcataaatgccaaaagaaactgccaaa
gcatccaggcagttggctcatgactgtaaccccagaaagctatgttaaga
acattacaagcctcaaatttgaggccagcctgggccacataatgggtcct
gggctagtctgggctatatagagagtaagaccctttttcaaaacaaaagg
aaaatgtcaaagaagatatactctaattacaaacataccacctgttggat
gatgctactcttgtgtccatctgcctagattctttctaaattaagtagct
tttaaattcatattctctctctctctctctctctctctctctctctctct
ctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88638703_88639240
seq2: B6Ng01-346N24.b_48_585

seq1  GAATTCTCCTTTTCTTCCTATGTTCCAAGTATTTTGTGGGGAGGGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTCTTCCTATGTTCCAAGTATTTTGTGGGGAGGGTGATT  50

seq1  AGTTGTCAACTTACGCTATGGAAACTATGGATTCCCCACCCCCAGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAACTTACGCTATGGAAACTATGGATTCCCCACCCCCAGGTTTT  100

seq1  GAGTTTGGTCGGTAACTAGAGAAGAGTAGGAAGACTCCCCCAACCCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGTCGGTAACTAGAGAAGAGTAGGAAGACTCCCCCAACCCTTGC  150

seq1  CTTCCTCCCTCCTTCCCTTTCTTTCATTCTTTTTCTTTGTTTCCGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCTCCTTCCCTTTCTTTCATTCTTTTTCTTTGTTTCCGAGACA  200

seq1  GGGTTTCTGTGTGTGGCCATGGCCGTCCTAAAGCTCGTCCTGTAGACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGTGTGTGGCCATGGCCGTCCTAAAGCTCGTCCTGTAGACTAG  250

seq1  CCTGGCCTCGAAATCAGGCCTACGTCTGCCTCCTCCTCATCCATCTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTCGAAATCAGGCCTACGTCTGCCTCCTCCTCATCCATCTATTT  300

seq1  GTCATGTGTTGGGTTACTTTTTCCATGAACTGACGTACCAGGGCTGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTTGGGTTACTTTTTCCATGAACTGACGTACCAGGGCTGTGGC  350

seq1  TTCACCAGGCCCTAAAACATGATGGCGCCGATCATCTGGCGCATGCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGGCCCTAAAACATGATGGCGCCGATCATCTGGCGCATGCTCCT  400

seq1  TGACGCGGAGGTCCCGCGCATCGGGGGCGCGCACGTCAGCCGGTGCCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCGGAGGTCCCGCGCATCGGGGGCGCGCACGTCAGCCGGTGCCGTT  450

seq1  GCGTTACTTCCGCTGGTGCAGGAGCTGAGTTTCCGCGGGATCAGAGCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTACTTCCGCTGGTGCAGGAGCTGAGTTTCCGCGGGATCAGAGCGGG  500

seq1  CCTCTGAGGGTATTTGGTAGTGTGTGGTGGGGCGGGAA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGGGTATTTGGTAGTGTGTGGTGGGGCGGGAA  538

seq1: chr3_88756977_88757422
seq2: B6Ng01-346N24.g_68_513 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAATATGAATTTAAAAGCTACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAATATGAATTTAAAAGCTACTTAA  100

seq1  TTTAGAAAGAATCTAGGCAGATGGACACAAGAGTAGCATCATCCAACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGAATCTAGGCAGATGGACACAAGAGTAGCATCATCCAACAGG  150

seq1  TGGTATGTTTGTAATTAGAGTATATCTTCTTTGACATTTTCCTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTTTGTAATTAGAGTATATCTTCTTTGACATTTTCCTTTTGTTT  200

seq1  TGAAAAAGGGTCTTACTCTCTATATAGCCCAGACTAGCCCAGGACCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGGGTCTTACTCTCTATATAGCCCAGACTAGCCCAGGACCCATT  250

seq1  ATGTGGCCCAGGCTGGCCTCAAATTTGAGGCTTGTAATGTTCTTAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCCAGGCTGGCCTCAAATTTGAGGCTTGTAATGTTCTTAACATA  300

seq1  GCTTTCTGGGGTTACAGTCATGAGCCAACTGCCTGGATGCTTTGGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGGGGTTACAGTCATGAGCCAACTGCCTGGATGCTTTGGCAGTT  350

seq1  TCTTTTGGCATTTATGAGTAAACTGTTTTTGGGATCTGTAAATTATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGCATTTATGAGTAAACTGTTTTTGGGATCTGTAAATTATTGAT  400

seq1  ATGTGCCTTTGGATATTGGAACGTCTTGGCTGGACTGTAGGAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTTTGGATATTGGAACGTCTTGGCTGGACTGTAGGAATTC  446