BAC Information

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BAC

Clone NameB6Ng01-347L03
Chromosome3 (Build37)
Map Location 36,668,527 - 36,669,712
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Downstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347L03.bB6Ng01-347L03.g
ACCGA129225GA129226
length1,2351,169
definitionB6Ng01-347L03.b B6Ng01-347L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctctaagacccaatgaagacaagaatatccaccctcacgtc
atttcaaacttgtaattctttgtccaagtagtaagtcaagagaaataaat
aaggcatgaatagaaaaggaagacatcaaagtgtttgctggcaacacgat
tttctagtttaaaaaatcctcaatattctaccagaaactcttaaaactga
aaaagtgaactcagcaaagttacaagattaaaaataatcaaacattcaaa
aatcattaacatttctccacactaatagcaagttttcaagagaacaatcc
caagaatagttaccaaaaataaaagtaaaaagtatttaagattaaattaa
ccaaaggagttaaagtcctaaacagttaaaactgtaaaacatgaaggaaa
gagattgaattaggagaaatatatttcatgttcactgggctgggacactg
taaaattttactagagagggtcttcagagtcagtgaagtcacctcagaac
cccattctctcatagctgtggtggtttgcatgagaacgccccgtaggctc
atgaatacctggttaccagggagaggcactaccagaaagaattagaaggt
gaacattgttggaggaagtatgtcactggctttgaggtttcaaaaagccc
attccaaggccagagttgctttcttcctgctgcctgcagatctggatgta
gacacctcagctccttttccagcacaatgtctcctggcatgctaccatac
tccctggcatgatgacaatggactaaacctctgtaagcactgtaagcaaa
cctcaattaaatgctttccattttaagtgttggtgatgtcactgagtctc
ttcacagcaagagaacactgaccaagatagcaactaaatggaaaacagtc
ctaaagttcatgtggaactaaagaagaaccagaactgccaaggaaatcat
gagcacaaaaacatagctttaaaactctcaccccaaatcatgagagatag
gccacgtattcaatgctaaactagacacaaagtttaaactgatgcaaagg
agaaaatggaccacaaaacacaagagaatagtttgaagactgtgaagccc
cggatcataaaacaccagagaaatacgagagtaatactaattcacctggt
tcatgtactgaattatggcttgataaacgtaagccaaaagaaacagtgga
ctatgttcaaaataaaaggtatatttctataccag
gaattctaaaattgtgtgtgtgtgtgtctgtgtgtctgtctgtctgtctg
tgtctttgtgacaaaaaaagaatcatgaggaagaaatctttgggcaaaga
aagggtaatgggatgcacgtggtctgagagcaagaggagaggaggcctcc
agggaatagtacggaagagaacagcagagaggcagagacaccaatgagaa
tgggagcaatgacaattatgtgtaaatcgccacaatgaaacctgctactc
catgcactgacttgaaatttaactttcaaattatattaagaatactcttt
tcttcttacttggttctgttttgcccaccaagctctgtcaccttctttgg
actttgagagaaatgtgactgggtctgcaactcctctcagcccatgaaat
tagtttcttttgttccatcagatattttgatttgacatctttaagtcatt
cccatgtttttctgatttgttgttttttttcttttcccccagttttgttt
tgtcttgtttttgcctcttcttttagtattatgaaaacaaagtaataggg
cctatttttgaaaactataaacctcatgtttaaatgtggctttctgggaa
tactgggttaagtgcaggattccagatgtgctctgtcacatgacaggaca
ctaatttttcctgattgctgaaccagatgctgtgttctcaagcagcagga
caccagtgctcccttcattcagtctctccttcactcaggctgccttaaac
caggtctctgtctatggctgcatgcttgttttgaaagagatggtccctcg
atcagaatttttgatgcctgccttttgtttattcctatattatcttcatc
ttttctattaagtacttaaccccttgctttccttaataacttatctacta
agattccatcagtgttttataaatcttgggctactacatttcagactttg
gcgcattcttagagactaggtagggtatattcagaaaacaaaaactcttt
attgaaaacagatcagattagattagagttcttggattcatactagacat
gttcttgcttatctggagtctgttttttcatgtactatctttgaacaagg
atgaccttaccaccattcctctcaaacattggaaactgcaggttcagctc
tacgagcttccttgtgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36668527_36669712
seq2: B6Ng01-347L03.g_66_1234

seq1  GAATTCTAAAATTGTGTGTGTGTGTGTCTGTGTGTCTGTCTGTCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATTGTGTGTGTGTGTGTCTGTGTGTCTGTCTGTCTGTCTG  50

seq1  TGTCTTTGTGACAAAAAAAGAATCATGAGGAAGAAATCTTTGGGCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTGACAAAAAAAGAATCATGAGGAAGAAATCTTTGGGCAAAGA  100

seq1  AAGGGTAATGGGATGCACGTGGTCTGAGAGCAAGAGGAGAGGAGGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAATGGGATGCACGTGGTCTGAGAGCAAGAGGAGAGGAGGCCTCC  150

seq1  AGGGAATAGTACGGAAGAGAACAGCAGAGAGGCAGAGACACCAATGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAGTACGGAAGAGAACAGCAGAGAGGCAGAGACACCAATGAGAA  200

seq1  TGGGAGCAATGACAATTATGTGTAAATCGCCACAATGAAACCTGCTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAATGACAATTATGTGTAAATCGCCACAATGAAACCTGCTACTC  250

seq1  CATGCACTGACTTGAAATTTAACTTTCAAATTATATTAAGAATACTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTGACTTGAAATTTAACTTTCAAATTATATTAAGAATACTCTTT  300

seq1  TCTTCTTACTTGGTTCTGTTTTGCCCACCAAGCTCTGTCACCTTCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTACTTGGTTCTGTTTTGCCCACCAAGCTCTGTCACCTTCTTTGG  350

seq1  ACTTTGAGAGAAATGTGACTGGGTCTGCAACTCCTCTCAGCCCATGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAGAAATGTGACTGGGTCTGCAACTCCTCTCAGCCCATGAAAT  400

seq1  TAGTTTCTTTTGTTCCATCAGATATTTTGATTTGACATCTTTAAGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTTTGTTCCATCAGATATTTTGATTTGACATCTTTAAGTCATT  450

seq1  CCCATGTTTTTCTGATTTGTTGTTTTTTTTCTTTTCCCCCAGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTTTTCTGATTTGTTGTTTTTTTTCTTTTCCCCCAGTTTTGTTT  500

seq1  TGTCTTGTTTTTGCCTCTTCTTTTAGTATTATGAAAACAAAGTAATAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTTTTTGCCTCTTCTTTTAGTATTATGAAAACAAAGTAATAGGG  550

seq1  CCTATTTTTGAAAACTATAAACCTCATGTTTAAATGTGGCTTTCTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTTGAAAACTATAAACCTCATGTTTAAATGTGGCTTTCTGGGAA  600

seq1  TACTGGGTTAAGTGCAGGATTCCAGATGTGCTCTGTCACATGACAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTTAAGTGCAGGATTCCAGATGTGCTCTGTCACATGACAGGACA  650

seq1  CTAATTTTTCCTGATTGCTGAACCAGATGCTGTGTTCTCAAGCAGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTCCTGATTGCTGAACCAGATGCTGTGTTCTCAAGCAGCAGGA  700

seq1  CACCAGTGCTCCCTTCATTCAGTCTCTCCTTCACTCAGGCTGCCTTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGCTCCCTTCATTCAGTCTCTCCTTCACTCAGGCTGCCTTAAAC  750

seq1  CAGGTCTCTGTCTATGGCTGCATGCTTGTTTTGAAAGAGATGGTCCCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCTGTCTATGGCTGCATGCTTGTTTTGAAAGAGATGGTCCCTCG  800

seq1  ATCAGAATTTTTGATGCCTGCCTTTTGTTTATTCCTATATTATCTTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAATTTTTGATGCCTGCCTTTTGTTTATTCCTATATTATCTTCATC  850

seq1  TTTTCTATTAAGTACTTAACCCCTTGCTTTCCTTAATAACTTATCTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATTAAGTACTTAACCCCTTGCTTTCCTTAATAACTTATCTACTA  900

seq1  AGATTCCATCAGGTGTTTTATAAATCTTGGGCCTACTACAATTCAGACTT  950
      ||||||||||| ||||||||||||||||||| |||||||| |||||||||
seq2  AGATTCCATCA-GTGTTTTATAAATCTTGGG-CTACTACATTTCAGACTT  948

seq1  TGGCGCATTCTTAGAGACCTAGGTAGGGTATAATTCAGAAAACAAAAACC  1000
      ||||||||||||||||| ||||||||||||| |||||||||||||||| |
seq2  TGGCGCATTCTTAGAGA-CTAGGTAGGGTAT-ATTCAGAAAACAAAAA-C  995

seq1  TCTTTAATTGAAAACAGATCCAGATTAAGATTTAGAG-TCTTGGATTTCA  1049
      ||||| ||||||||||||| |||||| ||| |||||| ||||||| ||||
seq2  TCTTT-ATTGAAAACAGAT-CAGATT-AGA-TTAGAGTTCTTGGA-TTCA  1040

seq1  TACTTAGACATG-TCTTGCTTATCTGGAGTCTGTTTTTTCATGTACCTAT  1098
      ||| |||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TAC-TAGACATGTTCTTGCTTATCTGGAGTCTGTTTTTTCATGTA-CTAT  1088

seq1  CTTTGAACAAAGGATGACTTTAACACACCATCCTCTCAAACATTGAGAAA  1148
      |||||||| ||||||||| ||| ||| |  ||||||||||||||| ||||
seq2  CTTTGAAC-AAGGATGACCTTACCAC-CATTCCTCTCAAACATTG-GAAA  1135

seq1  ACCTGCAGGTTCAGGCTCTCAACGAGC-TCTCTGTGACT  1186
        ||||||||||||   ||| |||||| ||  |||||||
seq2  --CTGCAGGTTCAG---CTCTACGAGCTTCCTTGTGACT  1169