BAC Information

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BAC

Clone NameB6Ng01-347L12
Chromosome3 (Build37)
Map Location 65,023,682 - 65,111,100
singlet/doubletdoublet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347L12.bB6Ng01-347L12.g
ACCGA129240GA129241
length990304
definitionB6Ng01-347L12.b B6Ng01-347L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,023,682 - 65,024,667)(65,110,797 - 65,111,100)
sequence
gaattcttcagacatggctcactcatatacccctcctcagaaaagatctc
ctttccatcttctaaagtcatctttctctctcaatactctccagccccat
tctgttttgtcacttgaaatgacagtcatgtgctacgtaacagtcaggac
atttccttagaaatacattgttcggggagtgggggtgggtggctatgggg
gacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaa
atggaaaaaaaagaaatacattgttcagtatgtttatcattgtgtgagca
tcacagagtttttatacaaaccaaactagctatgatgtcacgatgttcta
tactttacggtaccaacattgtgtatatggtccaccgttgaccaaaatgc
tatcaaatggcatgtctaactatcatactgcatgtctgtactatcaaatg
gcatgtctaactatcatactgcatgtctgtacagggtatgctttgatttc
ttgcttattgttggtttctctaaccaaaatgaaaatgtcttcttttttgt
tcttgtcattgctgtcttcagaggctagagcagcatttgagaagcaaact
tatagttatttgttacataacttgacaaaaatctccccagaagagttttt
aaaatcctgcatataatatgtattctcttatataccaggcatggagaagc
atgcctctaatggctgcacttggaaagacaggcaggacagatctctgtgg
gctcaatacagcccatctctatacagtctgctctgtatagagactttcta
ggccagctaagaccacataatgagactttctctcaaaacatcaaaataga
tagatagatagatagatagatagatagatagatagatcgatagattagac
agatcaaattatttgtgtcctatgtgaaacaagtgttttgacccaaattg
attggggaagtcgcttattttagaaagactctgcatttaa
ttcgccccaggttgtaatcctataatgtaggaatatttggaatctatgtt
attctcaaaacaaaacaaaacaaaacaccaaaaaaaaaaaaaacccaaaa
caccagaggtttaagtaacttgtaggttatttagctcataagtaataagt
agtaggaatttgaatgttggtctcaaagctcatgtacacagaaataaaca
ccaaaaattgagaaatacaaacctcagataaacactttttaaacactgaa
atgataaataaacattatggttaaaagtatgtgtatatgtgagggagggg
gaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65023682_65024667
seq2: B6Ng01-347L12.b_52_1041

seq1  GAATTCTTCAGACATGGCTCACTCATATACTCCTCCTCAGAAAAGATCTC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCTTCAGACATGGCTCACTCATATACCCCTCCTCAGAAAAGATCTC  50

seq1  CTTTCCATCTTCTAAAGTCATCTTTCTCTCTCAATACTCTCCAGCCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATCTTCTAAAGTCATCTTTCTCTCTCAATACTCTCCAGCCCCAT  100

seq1  TCTGTTTTGTCACTTGAAATGACAGTCATGTGCTACGTAACAGTCAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGTCACTTGAAATGACAGTCATGTGCTACGTAACAGTCAGGAC  150

seq1  ATTTCCTTAGAAATACATTGTTCGGGGAGTGGGGGTGGGTGGCTATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTAGAAATACATTGTTCGGGGAGTGGGGGTGGGTGGCTATGGGG  200

seq1  GACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAA  250

seq1  ATGGAAAAAAAAGAAATACATTGTTCAGTATGTTTATCATTGTGTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAAAAGAAATACATTGTTCAGTATGTTTATCATTGTGTGAGCA  300

seq1  TCACAGAGTTTTTATACAAACCAAACTAGCTATGATGTCACGATGTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGTTTTTATACAAACCAAACTAGCTATGATGTCACGATGTTCTA  350

seq1  TACTTTACGGTACCAACATTGTGTATATGGTCCACCGTTGACCAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACGGTACCAACATTGTGTATATGGTCCACCGTTGACCAAAATGC  400

seq1  TATCAAATGGCATGTCTAACTATCATACTGCATGTCTGTACTATCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGGCATGTCTAACTATCATACTGCATGTCTGTACTATCAAATG  450

seq1  GCATGTCTAACTATCATACTGCATGTCTGTACAGGGTATGCTTTGATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTAACTATCATACTGCATGTCTGTACAGGGTATGCTTTGATTTC  500

seq1  TTGCTTATTGTTGGTTTCTCTAACCAAAATGAAAATGTCTTCTTTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTGTTGGTTTCTCTAACCAAAATGAAAATGTCTTCTTTTTTGT  550

seq1  TCTTGTCATTGCTGTCTTCAGAGGCTAGAGCAGCATTTGAGAAGCAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTGCTGTCTTCAGAGGCTAGAGCAGCATTTGAGAAGCAAACT  600

seq1  TATAGTTATTTGTTACATAACTTGACAAAAATCTCCCCAGAAGAGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTATTTGTTACATAACTTGACAAAAATCTCCCCAGAAGAGTTTTT  650

seq1  AAAATCCTGCATATAATATGTATTCTCTTATATACCAGGCATGGAGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGCATATAATATGTATTCTCTTATATACCAGGCATGGAGAAGC  700

seq1  ATGCCTCTAATGGCTGCACTTGGAAAGACAGGCAGGACAGATCTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTAATGGCTGCACTTGGAAAGACAGGCAGGACAGATCTCTGTGG  750

seq1  GCTCAATACAGCCCATCTCTATACAGTCTGCTCTGTATAGAGAC-TTCTA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTCAATACAGCCCATCTCTATACAGTCTGCTCTGTATAGAGACTTTCTA  800

seq1  GGCCAGCTAAGACCACATAATGAGACTTTCTCTCAAAACATCAAAATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTAAGACCACATAATGAGACTTTCTCTCAAAACATCAAAATAGA  850

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT-----  894
      ||||||||||||||||||||||||||||||||||||| |||||||     
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATCGATAGATTAGAC  900

seq1  AGATAAAATAATTTGTGTCCTATTGTGAAACAAGTGTTTCAACCCAAACT  944
      |||| |||| |||||||||||| ||||||||||||||||  ||||||| |
seq2  AGATCAAATTATTTGTGTCCTA-TGTGAAACAAGTGTTTTGACCCAAATT  949

seq1  GATTTGGGAAGTCGCTTATTTTAGAAAGACTTCTGCATTTAA  986
      |||| ||||||||||||||||||||||||| |||||||||||
seq2  GATTGGGGAAGTCGCTTATTTTAGAAAGAC-TCTGCATTTAA  990

seq1: chr3_65110797_65111100
seq2: B6Ng01-347L12.g_74_377 (reverse)

seq1  TCTCCCCCTCCCTCACATATACACATACTTTTAACCATAATGTTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCCCTCACATATACACATACTTTTAACCATAATGTTTATTTA  50

seq1  TCATTTCAGTGTTTAAAAAGTGTTTATCTGAGGTTTGTATTTCTCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGTGTTTAAAAAGTGTTTATCTGAGGTTTGTATTTCTCAATTT  100

seq1  TTGGTGTTTATTTCTGTGTACATGAGCTTTGAGACCAACATTCAAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTATTTCTGTGTACATGAGCTTTGAGACCAACATTCAAATTCC  150

seq1  TACTACTTATTACTTATGAGCTAAATAACCTACAAGTTACTTAAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTATTACTTATGAGCTAAATAACCTACAAGTTACTTAAACCTCT  200

seq1  GGTGTTTTGGGTTTTTTTTTTTTTTGGTGTTTTGTTTTGTTTTGTTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGGGTTTTTTTTTTTTTTGGTGTTTTGTTTTGTTTTGTTTTGA  250

seq1  GAATAACATAGATTCCAAATATTCCTACATTATAGGATTACAACCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACATAGATTCCAAATATTCCTACATTATAGGATTACAACCTGGGG  300

seq1  CGAA  304
      ||||
seq2  CGAA  304