BAC Information

Click to search

BAC

Clone NameB6Ng01-347L13
Chromosome3 (Build37)
Map Location 108,074,088 - 108,193,190
singlet/doubletdoublet
Overlap genePsma5, Sort1, Mybphl, Psrc1
Upstream geneHbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686
Downstream geneCelsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347L13.bB6Ng01-347L13.g
ACCGA129242GA129243
length1,0691,095
definitionB6Ng01-347L13.b B6Ng01-347L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,192,110 - 108,193,190)(108,074,088 - 108,075,173)
sequence
gtagataggaagaagtggagtgggagtttctggggcttttttcttttctc
ttttctttctttttctttttctttttctttttcttttttttttttttttt
tttttttttttttttttttttttttgggaaggggttctctgtatagccct
ggctggaactcattcaataaatcaggctggcctccagctcaaaaatctgt
ctgcccctgccccccaaggggtgggattaaaggggggggccccccccccc
tggcttttgtggggtgtctgtttgtttgtttgtttttttgggggaataaa
gcatacactcattctgggaataagtatgtttttggtgacccttcttctag
tcctaatttttgtttttgaaagctccatccaacaaatgaggatataatga
accaaccctggaacctcaagcagcagcctgatttgtttgccccttggttc
tctgtctacaaaatgagggcaggggtaacagcagctgcctaattgagctt
ttaggaggattaaataacttaacacatgcaaagtgcttacaacttttcac
agtgcatagcaagaggccaataaacactggcttctcctgttgttgcttgt
ggagtggaaaaagtgtggaggacggagagaaaattagaaatctaagccag
ggaggaggcggcaagcaggtagctaaacaagaagggcagctgtggcaggt
aagcactaccaccaagtgagttcggcaggtttggagtcagcgagccctat
tgggtggaggcagaaactcagattgacccagtgagagaaaatgctttgcc
ggctccagccaccaggtggcagcaacacaagggcttgtgggttggctttg
cttccccacccccaagggcttggtttccaaccaaacaaaaccaccaacca
aaccggaacaacctgccacctactggccatgcgaggtgttgtgttcctag
gcttgctgcttactgcagacgccagttagagtgcagcacttctgtttcct
gagctctgtgcaaacttattcactgggattgagcccagacagcaagcctt
gagacccaaggaatcaagg
gaattccagaccagagagagattgatttcaaaaaggtatctgtggagtaa
catccaagttgtcctctgacttccacttgggtgcatgtgcaacccccccc
ccccaacaaacacccccacacacacacatctgcacatacctgaaaataca
gacactaaagagaggaaaaatggttaccaaacagatcacactgttgtgag
aattaatcagaaataacagacacagaataatccattgcttttagaaaatg
ttaccagtaagcttgttcaatatgaggttgccactgatctgcagtatttg
ctaagtgcagcacaacaaagcacaataaaatgcggtttgcttgtaatata
gctttcatatgtagagaaaattaaatgttagttagtgctgtgtgtgtatg
tgtacacaagtgagagccatataggaagaggaatttgaaatgagagaata
cctcatcaaattagtttttgggcaaatccttaggatgttttcttgattag
tgattagtacgggagggtctagctcactacaggtggtgccacctctgtgc
aggtggttctgggatgtataagatagcaaattgagcaagccaggaagagc
aagccagtaagcagcattcctccatagcctctgctacctttccttcctct
acttccctcagtgatggagtgtgacctgagagttctaagatgaaataaat
cctttcttccaaaggtactgttggtcatggtgtttatcacatcaatagga
accctaaagacaggaaataaaatggaaagtggattttctgaatcattgga
ttgccctctttaggtcacttggatattactaggctgttcaccaggttata
tcatcctctagatcatggaattgagataagcatatactagggacgcacag
ccctgtcctctttctcaaagatgattttactagatgagcgtaagtgagac
atttttcttctaagtattatatccttgaatatttacattattatattaat
gtactacattataccaaataagggtgtaaggtttattaattatcagctaa
gttgtttctgcagaaaagatgcgggggagggttaaaggaaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108192110_108193190
seq2: B6Ng01-347L13.b_57_1125 (reverse)

seq1  CCTTGATCTCCTGGGGTCTTCCAGGCTTGCTTGTCCTGGGCCTCCATCCC  50
      ||||||| |||| ||||| || |||||||| ||| ||||| ||| |||||
seq2  CCTTGAT-TCCTTGGGTC-TCAAGGCTTGC-TGT-CTGGG-CTCAATCCC  45

seq1  AGTGAATAAGTCTGCACAGAGCTCAGGAAACAGAAGTTGCTGGCAACTTC  100
      ||||||||||| |||||||||||||||||||||||| |||| |||   ||
seq2  AGTGAATAAGTTTGCACAGAGCTCAGGAAACAGAAG-TGCT-GCA--CTC  91

seq1  TAACTGGCGTCTGCAGT-AGCAGCCAAGCCTAAGAACAC-ACACCTCGGC  148
      ||||||||||||||||| ||||| |||||||| |||||| ||||||| ||
seq2  TAACTGGCGTCTGCAGTAAGCAG-CAAGCCTAGGAACACAACACCTC-GC  139

seq1  ATGGCCAGTAGGTGGCAGGTTTGTTCCGTTTTGGTTGGTTGGTTTTGTTT  198
      ||||||||||||||||||| |||||||| ||||||||| |||||||||||
seq2  ATGGCCAGTAGGTGGCAGG-TTGTTCCGGTTTGGTTGG-TGGTTTTGTTT  187

seq1  GGTTTTGGAACCAAGCCCTTGTGGGTGGGGAAGCAAAGCC-AGCCACAAG  247
      || || | ||||||||||||| |||||||||||||||||| | |||||||
seq2  GG-TTGGAAACCAAGCCCTTGGGGGTGGGGAAGCAAAGCCAACCCACAAG  236

seq1  CCCTTGTGTTGCTGCCACCTGGTGGCTGGAGCCGGCAAAGCATTTTCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGTTGCTGCCACCTGGTGGCTGGAGCCGGCAAAGCATTTTCTCT  286

seq1  CACTGGGTCAATCTTGAGTTTCTGCCTCCACCCAATAGGGCTCGCTGACT  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTCAATC-TGAGTTTCTGCCTCCACCCAATAGGGCTCGCTGACT  335

seq1  CCAAACCTGCCGAACTCACTTGGTGGTAGTGCTTACCTGCCACAGCTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCTGCCGAACTCACTTGGTGGTAGTGCTTACCTGCCACAGCTGCC  385

seq1  CTTCTTGTTTAGCTACCTGCTTGCCGCCTCCTCCCTGGCTTAGATTTCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTTAGCTACCTGCTTGCCGCCTCCTCCCTGGCTTAGATTTCTA  435

seq1  ATTTTCTCTCCGTCCTCCACACCTCTTCCACTCCACAAGCAACAACAGGA  497
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  ATTTTCTCTCCGTCCTCCACACTTTTTCCACTCCACAAGCAACAACAGGA  485

seq1  GAAGCCAGTGTTTATTGGCCTCTTGCTATGCACTGTGAAAAGTTGTAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTGTTTATTGGCCTCTTGCTATGCACTGTGAAAAGTTGTAAGC  535

seq1  ACTTTGCATGTGTTAAGTTATTTAATCCTCCTAAAAGCTCAATTAGGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATGTGTTAAGTTATTTAATCCTCCTAAAAGCTCAATTAGGCAG  585

seq1  CTGCTGTTACCACTGCCCTCATTTTGTAGACAGAGAACCAAGGCGCAAAC  647
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTGCTGTTACCCCTGCCCTCATTTTGTAGACAGAGAACCAAGGGGCAAAC  635

seq1  AAATCAGGCTGCTGCTTGAGGTTCCAGGGTTGGTTCATTATATCCTCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGCTGCTGCTTGAGGTTCCAGGGTTGGTTCATTATATCCTCATT  685

seq1  TGTTGGATGGAGCTTTCAAAAACAAAAATTAGGACTAGAAGTAGTGTCAC  747
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TGTTGGATGGAGCTTTCAAAAACAAAAATTAGGACTAGAAGAAGGGTCAC  735

seq1  CAAATACATACTTATTCCCAGAATGAGTGTATGCTTTATTCCCCCAAGAA  797
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAAAACATACTTATTCCCAGAATGAGTGTATGCTTTATTCCCCCAAAAA  785

seq1  AACAGACAGACAGACAGACAGCCCACAATAGCCAGGTGGTGGTGGCACAC  847
      |||| ||| ||| ||||||| ||||||| ||||||| || || ||| | |
seq2  AACAAACAAACAAACAGACACCCCACAAAAGCCAGGGGGGGGGGGCCCCC  835

seq1  ACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACAGATCTCTGAGCTC  897
       |||||||||||| | |||||| ||||| ||||||||||| | |||||| 
seq2  CCCTTTAATCCCACCCCTTGGGGGGCAGGGGCAGACAGATTTTTGAGCTG  885

seq1  GAGGCCAGCCTGATCTATTGAATGAGTTCCAGCCAGGGCTATACAGAGAA  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGATTTATTGAATGAGTTCCAGCCAGGGCTATACAGAGAA  935

seq1  ACCCTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  997
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  985

seq1  AGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAAGAGAAAAGAAAAAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAAGAGAAAAGAAAAAAGC  1035

seq1  CCCAGAAACTCCCACTCCACTTCTTCCTATCTAC  1081
      ||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTCCCACTCCACTTCTTCCTATCTAC  1069

seq1: chr3_108074088_108075173
seq2: B6Ng01-347L13.g_69_1163

seq1  GAATTCCAGACCAGAGAGAGATTGATTTCAAAAAGGTATCTGTGGAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGAGAGAGATTGATTTCAAAAAGGTATCTGTGGAGTAA  50

seq1  CATCCAAGTTGTCCTCTGACTTCCACTTGGGTGCATGTGCAACCCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTTGTCCTCTGACTTCCACTTGGGTGCATGTGCAACCCCCCCC  100

seq1  CCCCAACAAACACCCCCACACACACACATCTGCACATACCTGAAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACAAACACCCCCACACACACACATCTGCACATACCTGAAAATACA  150

seq1  GACACTAAAGAGAGGAAAAATGGTTACCAAACAGATCACACTGTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAAGAGAGGAAAAATGGTTACCAAACAGATCACACTGTTGTGAG  200

seq1  AATTAATCAGAAATAACAGACACAGAATAATCCATTGCTTTTAGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCAGAAATAACAGACACAGAATAATCCATTGCTTTTAGAAAATG  250

seq1  TTACCAGTAAGCTTGTTCAATATGAGGTTGCCACTGATCTGCAGTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTAAGCTTGTTCAATATGAGGTTGCCACTGATCTGCAGTATTTG  300

seq1  CTAAGTGCAGCACAACAAAGCACAATAAAATGCGGTTTGCTTGTAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCAGCACAACAAAGCACAATAAAATGCGGTTTGCTTGTAATATA  350

seq1  GCTTTCATATGTAGAGAAAATTAAATGTTAGTTAGTGCTGTGTGTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATATGTAGAGAAAATTAAATGTTAGTTAGTGCTGTGTGTGTATG  400

seq1  TGTACACAAGTGAGAGCCATATAGGAAGAGGAATTTGAAATGAGAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAGTGAGAGCCATATAGGAAGAGGAATTTGAAATGAGAGAATA  450

seq1  CCTCATCAAATTAGTTTTTGGGCAAATCCTTAGGATGTTTTCTTGATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCAAATTAGTTTTTGGGCAAATCCTTAGGATGTTTTCTTGATTAG  500

seq1  TGATTAGTACGGGAGGGTCTAGCTCACTACAGGTGGTGCCACCTCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTACGGGAGGGTCTAGCTCACTACAGGTGGTGCCACCTCTGTGC  550

seq1  AGGTGGTTCTGGGATGTATAAGATAGCAAATTGAGCAAGCCAGGAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCTGGGATGTATAAGATAGCAAATTGAGCAAGCCAGGAAGAGC  600

seq1  AAGCCAGTAAGCAGCATTCCTCCATAGCCTCTGCTACCTTTCCTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGCAGCATTCCTCCATAGCCTCTGCTACCTTTCCTTCCTCT  650

seq1  ACTTCCCTCAGTGATGGAGTGTGACCTGAGAGTTCTAAGATGAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCAGTGATGGAGTGTGACCTGAGAGTTCTAAGATGAAATAAAT  700

seq1  CCTTTCTTCCAAAGGTACTGTTGGTCATGGTGTTTATCACATCAATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCAAAGGTACTGTTGGTCATGGTGTTTATCACATCAATAGGA  750

seq1  ACCCT-AAGACAGGAAATAAAATGGAAAGTGGATTTTCTGAATCATTGGA  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAAGACAGGAAATAAAATGGAAAGTGGATTTTCTGAATCATTGGA  800

seq1  TTGCCCTCTTTAGGTCACTTGGATATTACTAGGCTGTTCACCAGGTTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCTTTAGGTCACTTGGATATTACTAGGCTGTTCACCAGGTTATA  850

seq1  TCATCCTCTAGATCATGGAATTGAGATAAGCATATACTAGGGACGCACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTAGATCATGGAATTGAGATAAGCATATACTAGGGACGCACAG  900

seq1  CCCTGTCCTCTTTCTCAAAGATGA-TTTACTAGATGAGCGTTAGTGAGAC  948
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CCCTGTCCTCTTTCTCAAAGATGATTTTACTAGATGAGCGTAAGTGAGAC  950

seq1  ATTTTTCTTCTAAGTA-TATATCCTTGAATATTTACATTATTATA-TAAT  996
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  ATTTTTCTTCTAAGTATTATATCCTTGAATATTTACATTATTATATTAAT  1000

seq1  GTACTACATTATA-CAAATAA-GGTGTAAGGTTTATTAA-TATCAGCTAA  1043
      ||||||||||||| ||||||| ||||||||||||||||| ||||||||||
seq2  GTACTACATTATACCAAATAAGGGTGTAAGGTTTATTAATTATCAGCTAA  1050

seq1  GTTGTTTCTGCAG-AGAGATGC-GGGGAGGGTTAAAGGAAGGAAT  1086
      ||||||||||||| | |||||| ||||||||||||||||||||||
seq2  GTTGTTTCTGCAGAAAAGATGCGGGGGAGGGTTAAAGGAAGGAAT  1095