BAC Information

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BAC

Clone NameB6Ng01-348A03
Chromosome3 (Build37)
Map Location 147,386,174 - 147,527,046
singlet/doubletdoublet
Overlap genenone
Upstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348A03.bB6Ng01-348A03.g
ACCGA129438GA129439
length1,1811,136
definitionB6Ng01-348A03.b B6Ng01-348A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,525,861 - 147,527,046)(147,386,174 - 147,387,296)
sequence
gaattcatacactttatgtatttttaaggaataaatacaaagtacatgct
attcttcctaccccaaagcaaagactaattgcaagaagcatgggaaaacc
cagttttgtttccttgaaaatgttttttttgtggtgcatatgaaacttca
gaagtcattagtggtcaggagtaaagttctctttctctctctctctctct
ctctctcgctctcgctctctcgctctctcgctctctcgctctctcgctct
ctcgctctcttgctctctctctctccaaagatctgctctcttgttctgta
cattgctctgtacattgagagcatgaatcctatttgccgacccctgtaat
tcttaggaaatattcagagcactggtcatttggacaaagagtctagtggc
tctgttggaaaaaagattaagatccccaaataatttgccttgaaaaatat
aacatgaaccaagcacagagaatggcatggtgaaagtaaaactcttggaa
caaattgtgatgacttgtttcttgaatcagcagtaatttcttctaggtta
agctgcccacagcaagcactgagctggcattaaatgcaagagcactaaat
gttgtttttgttttaaagaggaaaaaaactcaccctaaaaagccccagga
aaaatggaaagagaaaaatgagcccaaaaaacatgaacatgtttgttccc
tgcattgcaggctgtgttgagtggaatcaaggggccaatacccaactagt
gcacttacttcaagcaagaagtgatctgaatatgatatcttgctaatttt
ttcaactagccaacttatcaaccaataaaattgtgggaagagaaaagaat
gattgactgctggtaaaaataatagtcaatgggaagattgattctaatac
agtagtgtactggagcttgtagtgccttcttagagtacgcttaatgtttg
gcacattgcagttcctaaataaatatctgttgaatgtatggattaacttt
cctccctgcagaaaatgccaaaatggtccctcaggaagagcagtgctgca
gctgaatgcctgacctcaggttatctcctaagaatgctttcactagaact
gatgctcttataagaagttctggcatgtaagtagattgataacaggcttg
atgcacagcaaggcactcataaaaagttaag

gaattcagactctgcgttgatcttacattaagcacagctaatcaacttgt
tagggtgccttggggtttaatgtttatcatgacatttgcatattactcat
agttttaaactcctcattttggtgtgagatctgaagactgacttgtatgg
acaaacctcgtttactacatgtcagccattggtctgtggtttccaatatg
ccaatcagtgtagctctggatggtgtacggcagagcataggtacagaacc
ttagaagaacataccaactctaagtctatacagaatgcttagacagcttt
atgattttaaaaataatctctgtagttaataccttgctgccatccactca
atttgagttgcaacttacattcagtgaataagaatcttttaggttctgcc
attctcatatttcaatttgaaaatacgatagacacatatctactttgatt
tatgtatcatccttacttatttgagccagctggtccaacatagaattttt
gaatactttagaatcccagcttaataaattctttaactactttttctcat
ttcattaaattacacttggaagtgcttgctgattagctgcttcatagaga
aagcacagtgagagttattaaaatatctccaatgccttggaggaaggatg
ttatttagagaaataacaaaaacccccaaaccaaattgcttgtaatttag
ccattgcattttgtccttcatcccaccccttttctgcagaactagaggta
aaaagaatctgggatcttgaagaattctttcttattttttgtatctttgg
aaagttccttttatgtgtaaatgtaacttcaagggtttctgagagtgagc
acctataattttcagggcaaaagaaaggttcagcaggtaaaaatgcttgc
acacaaggctatgcctgagccccttgtcaaaaatgaacctaattctcaaa
gttgtccttcaatctcctcagagatattatatgtgttcatccattctctg
tcatctctctatctaatccaatctatctaatcaatctaatctattctatc
tatccaatccaatctaacttaactaactatctatcaatcttatatagtcg
atcatctatcacatggatcagctaatctgtcatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147525861_147527046
seq2: B6Ng01-348A03.b_47_1227 (reverse)

seq1  CTTAACTATTTATGAGTGCCCTGCTGTGCATCAAAGGCTGTTATCAATCT  50
      ||||||| |||||||||||| ||||||||||| ||| |||||||||||||
seq2  CTTAACTTTTTATGAGTGCCTTGCTGTGCATC-AAGCCTGTTATCAATCT  49

seq1  ACCTACATGCCAG-ACTTC-TAT-AGAGCATCCAGTTCTAGTGAAAAGCA  97
      || |||||||||| ||||| ||| ||||||| ||||||||||| ||||||
seq2  ACTTACATGCCAGAACTTCTTATAAGAGCAT-CAGTTCTAGTG-AAAGCA  97

seq1  TTCCTTAGGAGATAAACCTGGAGGTCAGGCATTCAGCCTGCAGCACTTGC  147
      || |||||||||| ||||| |||||||||||||||| ||||||||| |||
seq2  TT-CTTAGGAGAT-AACCT-GAGGTCAGGCATTCAG-CTGCAGCAC-TGC  142

seq1  TCTTCCTGAGGGACCATTTTGGCATTTTCTGCAGGGAGGAAAGTTAATCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAGGGACCATTTTGGCATTTTCTGCAGGGAGGAAAGTTAATCC  192

seq1  ATACATTCAACAGATATTTATTTAGGAACTGCAATGTGCCAAACATTAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAACAGATATTTATTTAGGAACTGCAATGTGCCAAACATTAAG  242

seq1  CGTACTCTAAGAAGGCACTACAAGCTCCAGTACACTACTGTATTAGAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCTAAGAAGGCACTACAAGCTCCAGTACACTACTGTATTAGAATC  292

seq1  AATCTTCCCATTGACTATTATTTTTACCAGCAGTCAATCATTCTTTTCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCATTGACTATTATTTTTACCAGCAGTCAATCATTCTTTTCTC  342

seq1  TTCCCACAATTTTATTGGTTGATAAGTTGGCTAGTTGAAAAAATTAGCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAATTTTATTGGTTGATAAGTTGGCTAGTTGAAAAAATTAGCAA  392

seq1  GATATCATATTCAGATCACTTCTTGCTTGAAGTAAGTGCACTAGTTGGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATATTCAGATCACTTCTTGCTTGAAGTAAGTGCACTAGTTGGGT  442

seq1  ATTGGCCCCTTGATTCCACTCAACACAGCCTGCAATGCAGGGAACAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCCTTGATTCCACTCAACACAGCCTGCAATGCAGGGAACAAACA  492

seq1  TGTTCATGTTTTTTGGGCTCATTTTTCTCTTTCCATTTTTCCTGGGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTTTTTTGGGCTCATTTTTCTCTTTCCATTTTTCCTGGGGCTT  542

seq1  TTTAGGGTGAGTTTTTTTCCTCTTTAAAACAAAAACAACATTTAGTGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTGAGTTTTTTTCCTCTTTAAAACAAAAACAACATTTAGTGCTC  592

seq1  TTGCATTTAATGCCAGCTCAGTGCTTGCTGTGGGCAGCTTAACCTAGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTAATGCCAGCTCAGTGCTTGCTGTGGGCAGCTTAACCTAGAAG  642

seq1  AAATTACTGCTGATTCAAGAAACAAGTCATCACAATTTGTTCCAAGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGCTGATTCAAGAAACAAGTCATCACAATTTGTTCCAAGAGTT  692

seq1  TTACTTTCACCATGCCATTCTCTGTGCTTGGTTCATGTTATATTTTTCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCACCATGCCATTCTCTGTGCTTGGTTCATGTTATATTTTTCAA  742

seq1  GGCAAATTATTTGGGGATCTTAATCTTTTTTCCAACAGAGCCACTAGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTATTTGGGGATCTTAATCTTTTTTCCAACAGAGCCACTAGACT  792

seq1  CTTTGTCCAAATGACCAGTGCTCTGAATATTTCCTAAGAATTACAGGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCAAATGACCAGTGCTCTGAATATTTCCTAAGAATTACAGGGGT  842

seq1  CGGCAAATAGGATTCATGCTCTCAATGTACAGAGCAATGTACAGAACAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAATAGGATTCATGCTCTCAATGTACAGAGCAATGTACAGAACAAG  892

seq1  AGAGCAGATCTTTGGAGAGAGAGAGAGCAAGAGAGCGAGAGAGCGAGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGATCTTTGGAGAGAGAGAGAGCAAGAGAGCGAGAGAGCGAGAGA  942

seq1  GCGAGAGAGCGAGAGAGCGAGAGAGCGAGAGCGAGAGAGAGAGAGAGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGAGCGAGAGAGCGAGAGAGCGAGAGCGAGAGAGAGAGAGAGAGA  992

seq1  GAGAGAAAGAGAACTTTACTCCTGACCACTAATGACTTCTGAAGTTTCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAGAACTTTACTCCTGACCACTAATGACTTCTGAAGTTTCAT  1042

seq1  ATGCACCACAAAAAAAACATTTTCAAGGAAACAAAACTGGGTTTTCCCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACAAAAAAAACATTTTCAAGGAAACAAAACTGGGTTTTCCCAT  1092

seq1  GCTTCTTGCAATTAGTCTTTGCTTTGGGGTAGGAAGAATAGCATGTACTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGCAATTAGTCTTTGCTTTGGGGTAGGAAGAATAGCATGTACTT  1142

seq1  TGTATTTATTCCTTAAAAATACATAAAGTGTATGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTCCTTAAAAATACATAAAGTGTATGAATTC  1181


seq1: chr3_147386174_147387296
seq2: B6Ng01-348A03.g_67_1202

seq1  GAATTCAGACTCTGCGTTGATCTTACATTAAGCACAGCTAATCAACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTCTGCGTTGATCTTACATTAAGCACAGCTAATCAACTTGT  50

seq1  TAGGGTGCCTTGGGGTTTAATGTTTATCATGACATTTGCATATTACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGCCTTGGGGTTTAATGTTTATCATGACATTTGCATATTACTCAT  100

seq1  AGTTTTAAACTCCTCATTTTGGTGTGAGATCTGAAGACTGACTTGTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAACTCCTCATTTTGGTGTGAGATCTGAAGACTGACTTGTATGG  150

seq1  ACAAACCTCGTTTACTACATGTCAGCCATTGGTCTGTGGTTTCCAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTCGTTTACTACATGTCAGCCATTGGTCTGTGGTTTCCAATATG  200

seq1  CCAATCAGTGTAGCTCTGGATGGTGTACGGCAGAGCATAGGTACAGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGTGTAGCTCTGGATGGTGTACGGCAGAGCATAGGTACAGAACC  250

seq1  TTAGAAGAACATACCAACTCTAAGTCTATACAGAATGCTTAGACAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAACATACCAACTCTAAGTCTATACAGAATGCTTAGACAGCTTT  300

seq1  ATGATTTTAAAAATAATCTCTGTAGTTAATACCTTGCTGCCATCCACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTAAAAATAATCTCTGTAGTTAATACCTTGCTGCCATCCACTCA  350

seq1  ATTTGAGTTGCAACTTACATTCAGTGAATAAGAATCTTTTAGGTTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTTGCAACTTACATTCAGTGAATAAGAATCTTTTAGGTTCTGCC  400

seq1  ATTCTCATATTTCAATTTGAAAATACGATAGACACATATCTACTTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATATTTCAATTTGAAAATACGATAGACACATATCTACTTTGATT  450

seq1  TATGTATCATCCTTACTTATTTGAGCCAGCTGGTCCAACATAGAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCATCCTTACTTATTTGAGCCAGCTGGTCCAACATAGAATTTTT  500

seq1  GAATACTTTAGAATCCCAGCTTAATAAATTCTTTAACTACTTTTTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTAGAATCCCAGCTTAATAAATTCTTTAACTACTTTTTCTCAT  550

seq1  TTCATTAAATTACACTTGGAAGTGCTTGCTGATTAGCTGCTTCATAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAATTACACTTGGAAGTGCTTGCTGATTAGCTGCTTCATAGAGA  600

seq1  AAGCACAGTGAGAGTTATTAAAATATCTCCAATGCCTTGGAGGAAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTGAGAGTTATTAAAATATCTCCAATGCCTTGGAGGAAGGATG  650

seq1  TTATTTAGAGAAATAACAAAAACCCCCAAACCAAATTGCTTGTAATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGAGAAATAACAAAAACCCCCAAACCAAATTGCTTGTAATTTAG  700

seq1  CCATTGCATTTTGTCCTTCATCCCACCCCTTTTCTGCAGAACTAGAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCATTTTGTCCTTCATCCCACCCCTTTTCTGCAGAACTAGAGGTA  750

seq1  AAAAGAATCTGGGATCTTGAAGAATTCTTTCTTATTTTTTGTATCTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCTGGGATCTTGAAGAATTCTTTCTTATTTTTTGTATCTTTGG  800

seq1  AAAGTTCCTTTTATGTGTAAATGTAACTTCAAGGG-TTCTGAGAGTGAGC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGTTCCTTTTATGTGTAAATGTAACTTCAAGGGTTTCTGAGAGTGAGC  850

seq1  ACCTATAATTTTCAGGGGCAAAAG-AAGGTTCAGCAGGTAAAAATGCTTG  898
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ACCTATAATTTTCA-GGGCAAAAGAAAGGTTCAGCAGGTAAAAATGCTTG  899

seq1  CACACAAGGCTATGCCTGAGCCCCTTGTCAAAAATGAACCTAATTCTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGGCTATGCCTGAGCCCCTTGTCAAAAATGAACCTAATTCTCAA  949

seq1  AGTTGTCCTTCAATCTCCTCAGAGATATTATAATGTGTTCATCCCATTCT  998
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AGTTGTCCTTCAATCTCCTCAGAGATATTAT-ATGTGTTCAT-CCATTCT  997

seq1  CTGTCATCTCTCTATCTA--TCTATCTATCT-ATCCATCT-ATCTA-TCT  1043
      ||||||||||||||||||   | |||||||| ||| |||| ||||| |||
seq2  CTGTCATCTCTCTATCTAATCCAATCTATCTAATCAATCTAATCTATTCT  1047

seq1  ATCTATCTA--TCTATCTACCT--ACCTACTATCTATC-ATC-TATATA-  1086
      ||||||| |   | ||||| ||  ||  |||||||||| ||| |||||| 
seq2  ATCTATCCAATCCAATCTAACTTAACTAACTATCTATCAATCTTATATAG  1097

seq1  TCTATCATCTATCAC-TTGATCATCT-ATCTGTCATCTA  1123
      || |||||||||||| | ||||| || ||||||||||||
seq2  TCGATCATCTATCACATGGATCAGCTAATCTGTCATCTA  1136


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