BAC Information

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BAC

Clone NameB6Ng01-348E24
Chromosome3 (Build37)
Map Location 90,454,288 - 90,554,676
singlet/doubletdoublet
Overlap geneS100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6
Downstream geneLOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348E24.bB6Ng01-348E24.g
ACCGA129644GA129645
length1,122958
definitionB6Ng01-348E24.b B6Ng01-348E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,553,553 - 90,554,676)(90,454,288 - 90,455,021)
sequence
gaattctctcccctattttcattttaacctcatggagtcttacccccact
gagaagatgatagctaaacaacaagcacatccatgcccactgaggaccct
cagctggcccagccaacagatgagggcctagttggcttggtctgccttgc
ctggcatttccatccttcagccttcgatttcagaagctgtccctcctcca
acagctgtcaccgcctccagacttagttctctctgattttagaggaaagc
ccttccctaggagcagagcactgtaactctagtttcccagaaatgaagta
acaagcattgatctgaaacaaaagagacgtgaccaagatacaaggtttaa
ggctgactcggactaaagcaacaaaagaaactcagataaaactaggacag
ggctgagaacacctggaaatcccctgtggaaaaaaaaaaacaggttctcc
ctgggaaagagtcagatagctacatactcccacagctccttcctaaaagc
agccttcaataatccttaccaacatttgcctggagtggtctatggattgt
gtccctgacatcaaggaatatcaggtctgtggtgatgggtgtgcttcact
tgtctgagagctatgatgtcagctcaccctcaactaccatccccttttcc
tttccacaagggctgaattctgggaaagaaataaaatattataatcccag
gaaatagttcactatgtgtcctcattaggacttcagaacctgtagccatc
acatacattcaccatccatgcctctccaaatatgattctgcttccttgaa
actcttcagccctctcccccatctctgtactttgtcagagaggttcacac
atacagctttccaacagtgcttttcagactcttaagttgtattctcagaa
ctagcatccttaaagattctgttcggctttccagtctgccatctgcaccc
agagcatgggctgttccagaagaactctgaacacaagttacaccagggag
aggagctggtctcccaggagtggctaacacaggcttacagacccacagca
ggacagctcaagtcagatacagcagatcatctaacagaaatatcagaatg
gcgaagggcaacaaagaatctt
gaattcactaggtagactaggctggcccggaatctcacagagattcatct
tcctttggcctctggagtgctgagattacaggcatgtaccacccctccac
aatatgttttcatattattctgagtcatttatcattcctatgagaaccac
ctgtttggtagattttattgatgagatgatttaggttcttaatatttaat
tttgggttcttaattatcttagatataatctcaatgtctcttcactattt
ggttattcctttgctaggcagaggcctctagattccagacgatctcattt
ctgacttcttgctgttattttctgagctatgagagtccctttgagaatgt
tcttgcctagtgtttcttccatgtgttcctcctgcagcttcaaggtttca
agttttacattaatgtctttggctcattttataactgactgttagaaaag
ataagagatagggacctatctgaatatataaattgcttttggtaggatgg
ccattttcacaatcatcctactataaatccatgagggtgagaggtctttc
catcccctgatatctttttcaaattttctttggtgttttaaacttttcat
tgtacaggtctttcattttcctggctaatttttcttcaagatatttttga
ggccattagtatttagaattattatagaaatgtgtgagccaggcatggtg
gtgcacgcctttaatcccagcactcaaaaggcagaggcaggcgtatttct
gagttccaggccagcctggtctacagagtgagttccaggacagccagggc
tatacagagaaaccctatcttgaaaaacaaacaaacaaacaaacaaacaa
atgtgtgtataaatttctgtcgtttgttaattttatggtcttttctatcc
tagcattgtttatttgtgtttattcttctctccatactgaagtattcctt
ctggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90553553_90554676
seq2: B6Ng01-348E24.b_47_1168 (reverse)

seq1  AAGATTCTTTTGTTTGCCTTTCGCCA-TCTGGTTATTCTGGTTTTAGATG  49
      ||||||||||   ||||| ||||||| |||| |  |||||   |||||||
seq2  AAGATTCTTT--GTTGCCCTTCGCCATTCTGATATTTCTG---TTAGATG  45

seq1  TTCTTGCTGTATCTGGCTGGAGCTTGTTCCTGCTGTGGGTCTGTAAGCCT  99
       || ||||||||||| || |||||   |||||||||||||||||||||||
seq2  ATC-TGCTGTATCTGACTTGAGCT--GTCCTGCTGTGGGTCTGTAAGCCT  92

seq1  GTGTTAG-CACTCCTGGGAGACCAGCT-CTCT-CCTGGTGTAACTTGTGT  146
      ||||||| ||||||||||||||||||| |||| |||||||||||||||||
seq2  GTGTTAGCCACTCCTGGGAGACCAGCTCCTCTCCCTGGTGTAACTTGTGT  142

seq1  TCAGAGTTC-TCTGGAACAGCCCATGCTCTGGGTGCAGATGGCAGACTGG  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTCTTCTGGAACAGCCCATGCTCTGGGTGCAGATGGCAGACTGG  192

seq1  AAAG-CGGACAGAATCTTTAAGGATGCTAGTTCTGAGAATACAACTTAAG  244
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGAACAGAATCTTTAAGGATGCTAGTTCTGAGAATACAACTTAAG  242

seq1  AGTCTGAAAAGCACTGTTGGAAAGCTGTATGTGTGAACCTCTCTGACAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAAAGCACTGTTGGAAAGCTGTATGTGTGAACCTCTCTGACAAA  292

seq1  GTACAGAGATGGGGGAGAGGGCTGAAGAGTTTCAAGGAAGCAGAATCATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGATGGGGGAGAGGGCTGAAGAGTTTCAAGGAAGCAGAATCATA  342

seq1  TTTGGAGAGGCATGGATGGTGAATGTATGTGATGGCTACAGGTTCTGAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAGGCATGGATGGTGAATGTATGTGATGGCTACAGGTTCTGAAG  392

seq1  TCCTAATGAGGACACATAGTGAACTATTTCCTGGGATTATAATATTTTAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGAGGACACATAGTGAACTATTTCCTGGGATTATAATATTTTAT  442

seq1  TTCTTTCCCAGAATTCAGCCCTTGTGGAAAGGAAAAGGGGATGGTAGTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCAGAATTCAGCCCTTGTGGAAAGGAAAAGGGGATGGTAGTTG  492

seq1  AGGGTGAGCTGACATCATAGCTCTCAGACAAGTGAAGCACACCCATCACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCTGACATCATAGCTCTCAGACAAGTGAAGCACACCCATCACC  542

seq1  ACAGACCTGATATTCCTTGATGTCAGGGACACAATCCATAGACCACTCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTGATATTCCTTGATGTCAGGGACACAATCCATAGACCACTCCA  592

seq1  GGCAAATGTTGGTAAGGATTATTGAAGGCTGCTTTTAGGAAGGAGCTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTTGGTAAGGATTATTGAAGGCTGCTTTTAGGAAGGAGCTGTG  642

seq1  GGAGTATGTAGCTATCTGACTCTTTCCCAGGGAGAACCTGTTTTTTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGTAGCTATCTGACTCTTTCCCAGGGAGAACCTGTTTTTTTTTT  692

seq1  TCCACAGGGGATTTCCAGGTGTTCTCAGCCCTGTCCTAGTTTTATCTGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGGGATTTCCAGGTGTTCTCAGCCCTGTCCTAGTTTTATCTGAG  742

seq1  TTTCTTTTGTTGCTTTAGTCCGAGTCAGCCTTAAACCTTGTATCTTGGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTTGCTTTAGTCCGAGTCAGCCTTAAACCTTGTATCTTGGTC  792

seq1  ACGTCTCTTTTGTTTCAGATCAATGCTTGTTACTTCATTTCTGGGAAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCTTTTGTTTCAGATCAATGCTTGTTACTTCATTTCTGGGAAACT  842

seq1  AGAGTTACAGTGCTCTGCTCCTAGGGAAGGGCTTTCCTCTAAAATCAGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACAGTGCTCTGCTCCTAGGGAAGGGCTTTCCTCTAAAATCAGAG  892

seq1  AGAACTAAGTCTGGAGGCGGTGACAGCTGTTGGAGGAGGGACAGCTTCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAGTCTGGAGGCGGTGACAGCTGTTGGAGGAGGGACAGCTTCTG  942

seq1  AAATCGAAGGCTGAAGGATGGAAATGCCAGGCAAGGCAGACCAAGCCAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGAAGGCTGAAGGATGGAAATGCCAGGCAAGGCAGACCAAGCCAAC  992

seq1  TAGGCCCTCATCTGTTGGCTGGGCCAGCTGAGGGTCCTCAGTGGGCATGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTCATCTGTTGGCTGGGCCAGCTGAGGGTCCTCAGTGGGCATGG  1042

seq1  ATGTGCTTGTTGTTTAGCTATCATCTTCTCAGTGGGGGTAAGACTCCATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTGTTGTTTAGCTATCATCTTCTCAGTGGGGGTAAGACTCCATG  1092

seq1  AGGTTAAAATGAAAATAGGGGAGAGAATTC  1124
      ||||||||||||||||||||||||||||||
seq2  AGGTTAAAATGAAAATAGGGGAGAGAATTC  1122

seq1: chr3_90454288_90455021
seq2: B6Ng01-348E24.g_65_798

seq1  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAGACTAGGCTGGCCCGGAATCTCACAGAGATTCATCT  50

seq1  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCCTCTGGAGTGCTGAGATTACAGGCATGTACCACCCCTCCAC  100

seq1  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTCATATTATTCTGAGTCATTTATCATTCCTATGAGAACCAC  150

seq1  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTAGATTTTATTGATGAGATGATTTAGGTTCTTAATATTTAAT  200

seq1  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTCTTAATTATCTTAGATATAATCTCAATGTCTCTTCACTATTT  250

seq1  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCCTTTGCTAGGCAGAGGCCTCTAGATTCCAGACGATCTCATTT  300

seq1  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTTGCTGTTATTTTCTGAGCTATGAGAGTCCCTTTGAGAATGT  350

seq1  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTAGTGTTTCTTCCATGTGTTCCTCCTGCAGCTTCAAGGTTTCA  400

seq1  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATTAATGTCTTTGGCTCATTTTATAACTGACTGTTAGAAAAG  450

seq1  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATAGGGACCTATCTGAATATATAAATTGCTTTTGGTAGGATGG  500

seq1  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCACAATCATCCTACTATAAATCCATGAGGGTGAGAGGTCTTTC  550

seq1  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGATATCTTTTTCAAATTTTCTTTGGTGTTTTAAACTTTTCAT  600

seq1  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGTCTTTCATTTTCCTGGCTAATTTTTCTTCAAGATATTTTTGA  650

seq1  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTAGTATTTAGAATTATTATAGAAATGTGTGAGCCAGGCATGGTG  700

seq1  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734
      ||||||||||||||||||||||||||||||||||
seq2  GTGCACGCCTTTAATCCCAGCACTCAAAAGGCAG  734