BAC Information

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BAC

Clone NameB6Ng01-348J01
Chromosome3 (Build37)
Map Location 120,290,288 - 120,291,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J01.bB6Ng01-348J01.g
ACCGA129824GA129825
length1,1791,123
definitionB6Ng01-348J01.b B6Ng01-348J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
ggagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcatatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcgttgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggag
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcaccttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg
gcacacctggttgttaccatgtagaagaatgcgaatccatccatacttat
cctccttgtactagtcaaatctaaatgatcaaggacctcacataaacaga
gaacctgaaactatgaggaaagtaggcaaggccttgaagattgcccagga
aattctgacgacgcatgcctgtccgtaatcgaatgcaatgtactaatgaa
ctcaggtctgcgagctagaaccgtctaat

gaattcacctccctcatatatctatctgcctattttaatgttacaaagta
gccagggggttatatacttgaaccaatacatcaaccttggataattccta
aagtcaacctggttctactctgtagcattaatgatgctttaaaattcact
cagccaaagccagatcatggaggtgcattgaaacgatgggttgaagtttc
cagacctttgttgaaattatatagggcttctcagataggctggacgaaca
gtagtaaaattataagtagtttttcttttacaacctgtaagtaaatacaa
actgtagcaatgattaacttttttaatattcttactgtttcgagactatt
atattaataaggccatcatggatcactgttgtacgccaatgaaattatta
gtctctgtatcatgctagtgtaattacagactaatggtttacaccattat
aaaagcactaaatattttactaaactgagtacagtatataaaaattaact
tgaatggctccaggcttaaaacaatagcatcagtggtgagaaagtctttc
ttctctaataaagaaacaaagctttcaaaggagaatatgtttaaatattt
gagttgaaaaaaactatagagctcaacgaaataaaaatctgaatggcatc
ttgttgtatgttgattctatattagcaaatattctttatataacatggga
aagagaaatgctttcttttgttttatatttattattgtatttattttaca
tttattattacatgtgtgtgtgtgtatacatgcacacccatgtatactct
caattgcactctagtgtagaggtcagaggactatctgtgggaatagattc
tgtctttctaccatgtggggcccaggaatcctaattccagttgtcaggcc
tgctggcaagtgctcttaccagctgagccctgatctattcttgtcagaga
ttaaagtttctaaggacagtacagtttagaatctttttttcttttcatgg
tggataaagacttactggaattcctaagaagataggtaactcaccgtaat
aataataaattttggcctggaaagtcagtcctcttggatgcccacatctg
gatatggaatgatacacgttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120290288_120291398
seq2: B6Ng01-348J01.g_64_1186

seq1  GAATTCACCTCCCTCATATATCTATCTGCCTATTTTAATGTTACAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCCTCATATATCTATCTGCCTATTTTAATGTTACAAAGTA  50

seq1  GCCAGGGGGTTATATACTTGAACCAATACATCAACCTTGGATAATTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGGTTATATACTTGAACCAATACATCAACCTTGGATAATTCCTA  100

seq1  AAGTCAACCTGGTTCTACTCTGTAGCATTAATGATGCTTTAAAATTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACCTGGTTCTACTCTGTAGCATTAATGATGCTTTAAAATTCACT  150

seq1  CAGCCAAAGCCAGATCATGGAGGTGCATTGAAACGATGGGTTGAAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAGCCAGATCATGGAGGTGCATTGAAACGATGGGTTGAAGTTTC  200

seq1  CAGACCTTTGTTGAAATTATATAGGGCTTCTCAGATAGGCTGGACGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTGTTGAAATTATATAGGGCTTCTCAGATAGGCTGGACGAACA  250

seq1  GTAGTAAAATTATAAGTAGTTTTTCTTTTACAACCTGTAAGTAAATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAAATTATAAGTAGTTTTTCTTTTACAACCTGTAAGTAAATACAA  300

seq1  ACTGTAGCAATGATTAACTTTTTTAATATTCTTACTGTTTCGAGACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCAATGATTAACTTTTTTAATATTCTTACTGTTTCGAGACTATT  350

seq1  ATATTAATAAGGCCATCATGGATCACTGTTGTACGCCAATGAAATTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAAGGCCATCATGGATCACTGTTGTACGCCAATGAAATTATTA  400

seq1  GTCTCTGTATCATGCTAGTGTAATTACAGACTAATGGTTTACACCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTATCATGCTAGTGTAATTACAGACTAATGGTTTACACCATTAT  450

seq1  AAAAGCACTAAATATTTTACTAAACTGAGTACAGTATATAAAAATTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTAAATATTTTACTAAACTGAGTACAGTATATAAAAATTAACT  500

seq1  TGAATGGCTCCAGGCTTAAAACAATAGCATCAGTGGTGAGAAAGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCTCCAGGCTTAAAACAATAGCATCAGTGGTGAGAAAGTCTTTC  550

seq1  TTCTCTAATAAAGAAACAAAGCTTTCAAAGGAGAATATGTTTAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAATAAAGAAACAAAGCTTTCAAAGGAGAATATGTTTAAATATTT  600

seq1  GAGTTGAAAAAAACTATAGAGCTCAACGAAATAAAAATCTGAATGGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAAAAACTATAGAGCTCAACGAAATAAAAATCTGAATGGCATC  650

seq1  TTGTTGTATGTTGATTCTATATTAGCAAATATTCTTTATATAACATGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATGTTGATTCTATATTAGCAAATATTCTTTATATAACATGGGA  700

seq1  AAGAGAAATGCTTTCTTTTGTTTTATATTTATTATTGTATTTATTTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGCTTTCTTTTGTTTTATATTTATTATTGTATTTATTTTACA  750

seq1  TTTATTATTACATGTGTGTGTGTGTATACATGCACACCCATGTATACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTACATGTGTGTGTGTGTATACATGCACACCCATGTATACTCT  800

seq1  CAATTGCACTCTAGTGTAGAGGTCAGAGGACTATCTGTGGGAATAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCACTCTAGTGTAGAGGTCAGAGGACTATCTGTGGGAATAGATTC  850

seq1  TGTCTTTCTACCATGTGGGGCCCAGGAAT-CTAATTCCAGTTGTCAGGCC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTCTTTCTACCATGTGGGGCCCAGGAATCCTAATTCCAGTTGTCAGGCC  900

seq1  TGCTGGCAAGTGCTCTTACCAGCTGAGCCCTGACCTAT--CTGTCAGAGA  947
      ||||||||||||||||||||||||||||||||| ||||   |||||||||
seq2  TGCTGGCAAGTGCTCTTACCAGCTGAGCCCTGATCTATTCTTGTCAGAGA  950

seq1  TTAAAGTTTCTAA-GACAGTACAGTTTAGAATC--TTTTTCTTTTCAT-G  993
      ||||||||||||| |||||||||||||||||||  ||||||||||||| |
seq2  TTAAAGTTTCTAAGGACAGTACAGTTTAGAATCTTTTTTTCTTTTCATGG  1000

seq1  TGGAT-AAGAC-TACTGG-ATTCCTAAGAGATTAGGGAAAACCACGTAAT  1040
      ||||| ||||| |||||| ||||||||||   |||| ||  |  ||||||
seq2  TGGATAAAGACTTACTGGAATTCCTAAGAAGATAGGTAACTCACCGTAAT  1050

seq1  AAT-ATAAATTTT-GCCTGAAAGTTCAGTCCTCCTGAATGGCCACATCTT  1088
      ||| ||||||||| ||||| ||  ||||||||| || ||| |||||||| 
seq2  AATAATAAATTTTGGCCTGGAAAGTCAGTCCTCTTGGATGCCCACATCTG  1100

seq1  GATATGGGATGATACACGTTCTA  1111
      ||||||| |||||||||||||||
seq2  GATATGGAATGATACACGTTCTA  1123


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