BAC Information

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BAC

Clone NameB6Ng01-349A12
Chromosome3 (Build37)
Map Location 95,627,930 - 95,628,327
singlet/doubletsinglet
Overlap genenone
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349A12.bB6Ng01-349A12.g
ACCGA130141GA130142
length1,170114
definitionB6Ng01-349A12.b B6Ng01-349A12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagttagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggacaaagaggaacactcctccattgttggtg
ggattccaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatacaagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacaccatgcccctccttaaaagtgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgagacga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacactgacaccatcgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagaaagtacctaaggagctaagggatctgcaccctataggtgg
acacattatgaactaacagtaccccggagctttgactctagctgcatatg
tatcaaaagatggctagtccgcatcactgaagagaggcccaatggaaacg
caactttatatgcccagttacagggtacgcaggcaaaaagggggagagtg
tggtggtgtaagggaaagct
aaaaccagcccagtgtgttagtgcacacctcttttgagttcaacaccagc
ctggtctacagagtaagttccaggacagccagggctacacagagaaaccc
tgtctcaaaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95627930_95628327
seq2: B6Ng01-349A12.g_107_186 (reverse)

seq1  TGTTTTTTGAGACAGGGTTTCACTGTACAGGAATCTTTTCAAAACCTCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAATTTGTCCTAATAATTAGATGAGTTGGTGCATGTAGAGTGCTTAGAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTTTAACATAGGGGAAGGCTTGATGACATAAGCCAATTTCAAAAGTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAGGTGTGTGTGTGTGTGTGTGTGTGTGAGAAAGAGAGACAGACAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAGACAGACAGACCATTGGAGGCAAGAGGAGGTTTGGATGCTATTTAACT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GAACTCTAGTCTCAGGAAGTGCAGCCAGTACTCACTCTCTCTTTTTTTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTTTTGGTTTGTTTTTCGAGACAGTGTTTCTCTGTGTAGCC  350
                        ||||||| ||||||| ||||||||||||||||
seq2  ------------------TGTTTTTTGAGACAGGGTTTCTCTGTGTAGCC  32

seq1  CTGCCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  398
      ||| ||||||||||||| |||||||||||||||||||  |||||||||
seq2  CTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGTGTTGAACTCA  80