BAC Information

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BAC

Clone NameB6Ng01-349F11
Chromosome3 (Build37)
Map Location 124,596,915 - 124,799,522
singlet/doubletdoublet
Overlap geneLOC668820
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F11.bB6Ng01-349F11.g
ACCGA130363GA130364
length1,1931,161
definitionB6Ng01-349F11.b B6Ng01-349F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,798,314 - 124,799,522)(124,596,915 - 124,598,092)
sequence
gaattcaggtactcctgcttgcatggctagaactttaacaattgaaacat
ctcctcagccctagcctcacattatgaacctaagaactgcaaaaccacca
gacattgtaatttcacaggctgagcacatctcagctggagaaattaagac
tttgttagaataacctgacaactagagacaaaagaaagtctgtgtcttgt
aaaaactaaagtttttacatgtcatactcttctgggccacttaaatgggg
gaaataaaaaaaaattgcctataacttgtaggagagaaaatatacagagc
ttggatatttggcattgcctggtatcagacatatgtcaataaatgatggt
tttgctcttgactttaccttgctcccttcattgcctctacatcattaacc
aagtaaaatattagcatatataagtaacaattgtgacatgtgaaatgtga
aaaaaagagattactttctaagatattcagaaataggttgatatgtaaga
gtttacatgtacaggacacattaaggagtgtccatgatagtattatgcca
ttaaagagaggaaagatacaatgttgataacagagacaatgtatgaaata
tttctgatgaaacacattgaaaacctcaccaaccatgtcagtaatcaatc
ccaacatattgctataatggttctgtttttaaaaacagatttgtttattt
ttatcttatacatatcactttttttgtctgcatgtatgcagtcataccat
gtgtgtgcctattgcctggaaaaagagttggataccctagaattgtatcg
cagaaaactgtgtgcttaccttgtggtgtttggatgctgaatctctgcca
tctttgaaagagcagcaagtactttgaaccactaagtcatattttgtatt
cttgaaaatgttcatacatacatacattttaatgaaaattcctttaagaa
tttttgacatgttttgacattttcgcctttcaatctcattcgtccaagta
gtttccaaatagcactttccaaaggtttctgtgttattatactctgaatt
tcccatacacccttcttcgctgccaaccctatgttaacatctgttctact
cttttctctttatcattttattaccatgtggttccctctcccctcacttg
aatcggaacccaggcactgactatcctgacctcaatgtgtata

gaattctttgtgggaaaaaattattataggaaaagcaaggtcattttctt
gttccataagaattttaagcatcaaacctagaaataaaacatttatatag
cacgtaataaaatgcagcatttaaggttttaaatttatttcttgctcctt
aaatgcatctatttaaacaactgtatcttcaacatatgcacttctataga
aattgtttctgaagtgaattgggctccaactgattagagatactgttgga
aaattcttagctttttcagctttgtttcagttaatggtcatagttaccat
ctgggcctagtttcagtgattttccataaatgagaaaacatatcaaataa
tttcaacaacagatgtgaagatgacataattcatcattattaaaagaagc
tcctaaatatcgttgatagttttggtaaatgcataatatgtacatagaat
gaaaatctcattaagtatttgttagattaataaacacaaataaaataatg
gaaacagctcttactaaggtatgtcctctgatatacttggaatggcatgt
gtaaggagagtcataagaaagaaaataataagaaaacaaagaagtgccag
aacactgtgtttattttaatgtattcttaagattaagaaaaaagcaattg
ctggcaaaatgagtagagtgtaagaataaattagaataataagtggaaat
gaagaactatagaaaaagttgcacagctcaggtctctgagaggtacatgt
tgtcatccaagcataaatgagaacaggggtcagacaggatggttcaagat
gaggcttcgaccctgagtgcttccacttgctgactgtggcttacttagta
gtcaaaaacattctagctctttgaaaaacagcaaaggcagccaatcaaca
gcaagctattttccttccctcaacgctgctctgactacagtcccaccccc
taccccctttgtaattaaagttaaactcagagcaaggacttgacagagat
taccagagcctcagataataaaccacattcctagagtcatctgttgtttt
acctcctgttgattctttctatttaattggaatattccccttatgcctcc
cctctacatatttcatatccccacctcattcttcccaaatgactgtggtc
cttacgattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124798314_124799522
seq2: B6Ng01-349F11.b_48_1240 (reverse)

seq1  TATACCCATTGAGGTCAGGAATTTAGTACAGTGCTGGGGTCTGGATTTCA  50
      ||||| ||||||||||||||   |||| ||||||  ||||   || ||||
seq2  TATACACATTGAGGTCAGGA---TAGT-CAGTGCCTGGGTTCCGA-TTCA  45

seq1  AGTGAGGGGAGAGAGAACACAATGGT-ATAAAATGATAAAGAGAAAAGAG  99
      ||||||||||||| ||||   ||||| |||||||||||||||||||||||
seq2  AGTGAGGGGAGAGGGAACCACATGGTAATAAAATGATAAAGAGAAAAGAG  95

seq1  TAGAACAAGAATGGTTAACATAGGGTTGGGCAGCGGAAGGAAGGGTGTAT  149
      |||||| |||   |||||||||||||| |||||||  | |||||||||||
seq2  TAGAAC-AGA--TGTTAACATAGGGTT-GGCAGCG--AAGAAGGGTGTAT  139

seq1  GGGGAAATTCCAGGAGTATTAATAACACAGAAACCTTTTGGAAAGTGCTA  199
       |||||||||   ||||| |||||||||||||||| ||||||||||||||
seq2  -GGGAAATTC--AGAGTA-TAATAACACAGAAACC-TTTGGAAAGTGCTA  184

seq1  TTTGGAAAACTACTTGGACGAATTGAGATTGAAAGGCGAAAATGTTCAAA  249
      ||||| |||||||||||||||| ||||||||||||||||||||| |||||
seq2  TTTGG-AAACTACTTGGACGAA-TGAGATTGAAAGGCGAAAATG-TCAAA  231

seq1  ACATGTCAAAAATTCTT-AAGGAATTTTCATTAAAATGTATGTATGTATG  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATGTCAAAAATTCTTAAAGGAATTTTCATTAAAATGTATGTATGTATG  281

seq1  AACATTTTCAAGAATACAAAATATGACTTAGTGGTTCAAAGTACTTGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCAAGAATACAAAATATGACTTAGTGGTTCAAAGTACTTGCTG  331

seq1  CTCTTTC-AAGATGGCAGAGATTCAGCATCCAAACACCACAAGGTAAGCA  397
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAAAGATGGCAGAGATTCAGCATCCAAACACCACAAGGTAAGCA  381

seq1  CACAGTTTTCTGCGATACAATTCTAGGGTATCCAACTCTTTTTCCAGGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTCTGCGATACAATTCTAGGGTATCCAACTCTTTTTCCAGGCA  431

seq1  ATAGGCACACACATGGTATGACTGCATACATGCAGACAAAAAAAGTGATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCACACACATGGTATGACTGCATACATGCAGACAAAAAAAGTGATA  481

seq1  TGTATAAGATAAAAATAAACAAATCTGTTTTTAAAAACAGAACCATTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGATAAAAATAAACAAATCTGTTTTTAAAAACAGAACCATTATA  531

seq1  GCAATATGTTGGGATTGATTACTGACATGGTTGGTGAGGTTTTCAATGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTTGGGATTGATTACTGACATGGTTGGTGAGGTTTTCAATGTG  581

seq1  TTTCATCAGAAATATTTCATACATTGTCTCTGTTATCAACATTGTATCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGAAATATTTCATACATTGTCTCTGTTATCAACATTGTATCTT  631

seq1  TCCTCTCTTTAATGGCATAATACTATCATGGACACTCCTTAATGTGTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTAATGGCATAATACTATCATGGACACTCCTTAATGTGTCCT  681

seq1  GTACATGTAAACTCTTACATATCAACCTATTTCTGAATATCTTAGAAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGTAAACTCTTACATATCAACCTATTTCTGAATATCTTAGAAAGT  731

seq1  AATCTCTTTTTTTCACATTTCACATGTCACAATTGTTACTTATATATGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTTTTTCACATTTCACATGTCACAATTGTTACTTATATATGCT  781

seq1  AATATTTTACTTGGTTAATGATGTAGAGGCAATGAAGGGAGCAAGGTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTACTTGGTTAATGATGTAGAGGCAATGAAGGGAGCAAGGTAAA  831

seq1  GTCAAGAGCAAAACCATCATTTATTGACATATGTCTGATACCAGGCAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCAAAACCATCATTTATTGACATATGTCTGATACCAGGCAATG  881

seq1  CCAAATATCCAAGCTCTGTATATTTTCTCTCCTACAAGTTATAGGCAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATCCAAGCTCTGTATATTTTCTCTCCTACAAGTTATAGGCAATT  931

seq1  TTTTTTTATTTCCCCCATTTAAGTGGCCCAGAAGAGTATGACATGTAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTTCCCCCATTTAAGTGGCCCAGAAGAGTATGACATGTAAAA  981

seq1  ACTTTAGTTTTTACAAGACACAGACTTTCTTTTGTCTCTAGTTGTCAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTTTTACAAGACACAGACTTTCTTTTGTCTCTAGTTGTCAGGT  1031

seq1  TATTCTAACAAAGTCTTAATTTCTCCAGCTGAGATGTGCTCAGCCTGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAACAAAGTCTTAATTTCTCCAGCTGAGATGTGCTCAGCCTGTGA  1081

seq1  AATTACAATGTCTGGTGGTTTTGCAGTTCTTAGGTTCATAATGTGAGGCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAATGTCTGGTGGTTTTGCAGTTCTTAGGTTCATAATGTGAGGCT  1131

seq1  AGGGCTGAGGAGATGTTTCAATTGTTAAAGTTCTAGCCATGCAAGCAGGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGGAGATGTTTCAATTGTTAAAGTTCTAGCCATGCAAGCAGGA  1181

seq1  GTACCTGAATTC  1209
      ||||||||||||
seq2  GTACCTGAATTC  1193


seq1: chr3_124596915_124598092
seq2: B6Ng01-349F11.g_69_1229

seq1  GAATTCTTTGTGGGAAAAAATTATTATAGGAAAAGCAAGGTCATTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGGAAAAAATTATTATAGGAAAAGCAAGGTCATTTTCTT  50

seq1  GTTCCATAAGAATTTTAAGCATCAAACCTAGAAATAAAACATTTATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATAAGAATTTTAAGCATCAAACCTAGAAATAAAACATTTATATAG  100

seq1  CACGTAATAAAATGCAGCATTTAAGGTTTTAAATTTATTTCTTGCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAATAAAATGCAGCATTTAAGGTTTTAAATTTATTTCTTGCTCCTT  150

seq1  AAATGCATCTATTTAAACAACTGTATCTTCAACATATGCACTTCTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCTATTTAAACAACTGTATCTTCAACATATGCACTTCTATAGA  200

seq1  AATTGTTTCTGAAGTGAATTGGGCTCCAACTGATTAGAGATACTGTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCTGAAGTGAATTGGGCTCCAACTGATTAGAGATACTGTTGGA  250

seq1  AAATTCTTAGCTTTTTCAGCTTTGTTTCAGTTAATGGTCATAGTTACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTAGCTTTTTCAGCTTTGTTTCAGTTAATGGTCATAGTTACCAT  300

seq1  CTGGGCCTAGTTTCAGTGATTTTCCATAAATGAGAAAACATATCAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTAGTTTCAGTGATTTTCCATAAATGAGAAAACATATCAAATAA  350

seq1  TTTCAACAACAGATGTGAAGATGACATAATTCATCATTATTAAAAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAACAGATGTGAAGATGACATAATTCATCATTATTAAAAGAAGC  400

seq1  TCCTAAATATCGTTGATAGTTTTGGTAAATGCATAATATGTACATAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATATCGTTGATAGTTTTGGTAAATGCATAATATGTACATAGAAT  450

seq1  GAAAATCTCATTAAGTATTTGTTAGATTAATAAACACAAATAAAATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCATTAAGTATTTGTTAGATTAATAAACACAAATAAAATAATG  500

seq1  GAAACAGCTCTTACTAAGGTATGTCCTCTGATATACTTGGAATGGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTCTTACTAAGGTATGTCCTCTGATATACTTGGAATGGCATGT  550

seq1  GTAAGGAGAGTCATAAGAAAGAAAATAATAAGAAAACAAAGAAGTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGAGTCATAAGAAAGAAAATAATAAGAAAACAAAGAAGTGCCAG  600

seq1  AACACTGTGTTTATTTTAATGTATTCTTAAGATTAAGAAAAAAGCAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGTTTATTTTAATGTATTCTTAAGATTAAGAAAAAAGCAATTG  650

seq1  CTGGCAAAATGAGTAGAGTGTAAGAATAAATTAGAATAATAAGTGGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAATGAGTAGAGTGTAAGAATAAATTAGAATAATAAGTGGAAAT  700

seq1  GAAGAACTATAGAAAAAGTTGCACAGCTCAGGTCTCTGAGAGGTACATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTATAGAAAAAGTTGCACAGCTCAGGTCTCTGAGAGGTACATGT  750

seq1  TGTCATCCAAGCATAAATGAGAACAGGGGTCAGACAGGATGGTTCAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCCAAGCATAAATGAGAACAGGGGTCAGACAGGATGGTTCAAGAT  800

seq1  GAGGCTTCGACCCTGAGTGCTTCCACTTGCTGACTGTGGCTTACTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCGACCCTGAGTGCTTCCACTTGCTGACTGTGGCTTACTTAGTA  850

seq1  GTCAAAAACATTCTAGCTCTTTGAAAAACAGCAAAGGCAGCCAATCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAACATTCTAGCTCTTTGAAAAACAGCAAAGGCAGCCAATCAACA  900

seq1  GCAAGCTATTTTCCTTCCCTCAACGCTGCTCTGACTACAGTCCCACCCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTATTTTCCTTCCCTCAACGCTGCTCTGACTACAGTCCCACCCCC  950

seq1  TACCCCCCTTTGTAATTAAAGTTAAAACTCAAGAGCAAGGACTTGACAGA  1000
      || |||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TA-CCCCCTTTGTAATTAAAGTT-AAACTC-AGAGCAAGGACTTGACAGA  997

seq1  GAATACCAGAGCCTCAGGAATATAAACCCACATTCCTAGAGTCATCTGTT  1050
      || ||||||||||||||  |||  || |||||||||||||||||||||||
seq2  GATTACCAGAGCCTCAG--ATAATAAACCACATTCCTAGAGTCATCTGTT  1045

seq1  GTTTTTACTCCTGTTGGATTCTTTCTATTTAATTGAAATAATTTCCCCTT  1100
      |||||  |||||||| ||||||||||||||||||| ||||  ||||||||
seq2  GTTTTACCTCCTGTT-GATTCTTTCTATTTAATTGGAATA--TTCCCCTT  1092

seq1  TAATGCCTCCCTCCTACATATTTCATTATTCCCCAACCTCAATTCTTTCC  1150
        |||||||||  |||||||||||| |||  ||| ||||| |||| ||||
seq2  --ATGCCTCCCCTCTACATATTTCA-TAT--CCCCACCTC-ATTC-TTCC  1135

seq1  CAAATGTACTGT-GTCCTTTAACGATTGC  1178
      |||||| ||||| ||||||  ||||||||
seq2  CAAATG-ACTGTGGTCCTT--ACGATTGC  1161


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