BAC Information

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BAC

Clone NameB6Ng01-349I20
Chromosome3 (Build37)
Map Location 55,747,658 - 55,748,786
singlet/doubletsinglet
Overlap genenone
Upstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I20.bB6Ng01-349I20.g
ACCGA130514GA130515
length9631,118
definitionB6Ng01-349I20.b B6Ng01-349I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctacaactagtttcctaatatagggtgtggtgtacctacacc
aaagtctgacatttatacaagaaatatctctaattgtgggcaaggaatga
gaaactatcatactgagttatgaaagtctgtgtacatctgagccttttca
aatggagattataaatttatgagtacaaatgaattgtcttaattcaaaat
acaaagtacacctattactcaacagtttgtatattcaaaactcttttttt
ttaattttttattaggtatttagctcatttacatttccaatgctatacca
aaagtcccccatacccacccacccccactcccctacccacccactccccc
tttttggccctggcgttcccttgtactggggcatataaattttgagtgtc
cagtgatggccgactaggccatcttttgatacatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccacctatagggttg
cagatccctttatctccttgggtactttctctagctcctccattgggagc
catatgatccatccattagctgactgtgagcatccacttctgtgtttgct
aggccccggcatagtctcacaagagacagctacatctgggtcctttcgat
aaaatcttgctagtgtatgcaatggtgtcagtgtttggatgctgattatg
gggtgaatccctggatatggcagtctctacatggaccatcctttcatctc
agctccaaactttgtctctgtaactccttccaagggtgttttgttcccac
ttctaaggaggggcatagtgtccacacttcagttcttcatttttcttgag
tttcatgtgtttaggaaattgtatcttatatcttgggtatcgtaagtttt
tgggctaacatccactttatcagtgagtacatattgtgtggagttccttg
tgaatgtgtacct

gaattcaagagctcttggatgggtattataagtattaactaaatcccaga
agggcaatatactaagtattaagtgtccaaagatacctgaaccacagcct
ctagaacctatagattgatcatgtttcatgtcaaatttatcttttcaagt
caaattaattgtatgtccattgaggcagggagatttccctgtaggtgtgc
tctgtctaaacacatgcactataaaaggtggacacttctgtggttccagg
aagcaggaaggaagaagacaggaaagaggagtcagaacaggaacagtaac
aagctcagtaggagaagcacctgacacactactggctcagagtatagcaa
gttaaatacaggagagagtgccgagtgccaaggtcgcccctcatggacaa
caaggaaagcaacaggtcctccacaagtcctctatgatgagatgctgaat
gtgttcacagccttaaatagtttgaaagtagatcccagtctccataagaa
agtggtccagctatgagtccagtctgaatgtgttagacttgtagcctgca
gaactaagggaattaataaaaagatgttatggaatacttgatttctgtga
atttgatgtggtcacaacacaaaactaagaaaatgaaagatacaacaaaa
gaaatatatggttatcagttaagaactttccacaaagactaaaagtaacc
aaaagcacatacccaagagacataaaacaccaagtagaactttaatagca
aataacccaaatttgtcataataaactattatagtagtttatgtttttat
tggttattttatttatttacatttcaaatgttatccccattcccagtttc
ccctccacaaacccttttccactccccctccccctgcttctatgagggtg
ttcccccaacaactcacccacccaaccccactctctgccctagcattccc
ctacactggggcatctagcttcacaggactagggcttcctcctcccattg
atgctagatgagccatctctctacatatgcaatggagtcatgggtctctc
catgtgtattattggctggtgattaagaacaaagaaaacttgcaattctc
ttcagaaaacatgttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55747658_55748786
seq2: B6Ng01-349I20.g_67_1184

seq1  GAATTCAAGAGCTCTTGGATGGGTATTATAAGTATTAACTAAATCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCTCTTGGATGGGTATTATAAGTATTAACTAAATCCCAGA  50

seq1  AGGGCAATATACTAAGTATTAAGTGTCCAAAGATACCTGAACCACAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATATACTAAGTATTAAGTGTCCAAAGATACCTGAACCACAGCCT  100

seq1  CTAGAACCTATAGATTGATCATGTTTCATGTCAAATTTATCTTTTCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCTATAGATTGATCATGTTTCATGTCAAATTTATCTTTTCAAGT  150

seq1  CAAATTAATTGTATGTCCATTGAGGCAGGGAGATTTCCCTGTAGGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAATTGTATGTCCATTGAGGCAGGGAGATTTCCCTGTAGGTGTGC  200

seq1  TCTGTCTAAACACATGCACTATAAAAGGTGGACACTTCTGTGGTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTAAACACATGCACTATAAAAGGTGGACACTTCTGTGGTTCCAGG  250

seq1  AAGCAGGAAGGAAGAAGACAGGAAAGAGGAGTCAGAACAGGAACAGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAGGAAGAAGACAGGAAAGAGGAGTCAGAACAGGAACAGTAAC  300

seq1  AAGCTCAGTAGGAGAAGCACCTGACACACTACTGGCTCAGAGTATAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGTAGGAGAAGCACCTGACACACTACTGGCTCAGAGTATAGCAA  350

seq1  GTTAAATACAGGAGAGAGTGCCGAGTGCCAAGGTCGCCCCTCATGGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATACAGGAGAGAGTGCCGAGTGCCAAGGTCGCCCCTCATGGACAA  400

seq1  CAAGGAAAGCAACAGGTCCTCCACAAGTCCTCTATGATGAGATGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGCAACAGGTCCTCCACAAGTCCTCTATGATGAGATGCTGAAT  450

seq1  GTGTTCACAGCCTTAAATAGTTTGAAAGTAGATCCCAGTCTCCATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACAGCCTTAAATAGTTTGAAAGTAGATCCCAGTCTCCATAAGAA  500

seq1  AGTGGTCCAGCTATGAGTCCAGTCTGAATGTGTTAGACTTGTAGCCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCAGCTATGAGTCCAGTCTGAATGTGTTAGACTTGTAGCCTGCA  550

seq1  GAACTAAGGGAATTAATAAAAAGATGTTATGGAATACTTGATTTCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGGGAATTAATAAAAAGATGTTATGGAATACTTGATTTCTGTGA  600

seq1  ATTTGATGTGGTCACAACACAAAACTAAGAAAATGAAAGATACAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGTGGTCACAACACAAAACTAAGAAAATGAAAGATACAACAAAA  650

seq1  GAAATATATGGTTATCAGTTAAGAACTTTCCACAAAGACTAAAAGTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATGGTTATCAGTTAAGAACTTTCCACAAAGACTAAAAGTAACC  700

seq1  AAAAGCACATACCCAAGAGACATAAAACACCAAGTAGAACTTTAATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACATACCCAAGAGACATAAAACACCAAGTAGAACTTTAATAGCA  750

seq1  AATAACCCAAATTTGTCATAATAAACTATTATAGTAGTTTATGTTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCAAATTTGTCATAATAAACTATTATAGTAGTTTATGTTTTTAT  800

seq1  TGGTTATTTTATTTATTTACATTTCAAATGTTATCCCCATTCCCAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTTTATTTATTTACATTTCAAATGTTATCCCCATTCCCAGTTTC  850

seq1  CCCTCCACAAACCCTTTTCCACTCCCCCTCCCCCTGCTTCTATGAGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACAAACCCTTTTCCACTCCCCCTCCCCCTGCTTCTATGAGGGTG  900

seq1  TTCCCCCAACAACTCACCCACCCAACCCCACCTCTCTGCCCTAGCATTCC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCCCCAACAACTCACCCACCCAACCCCA-CTCTCTGCCCTAGCATTCC  949

seq1  CCTACACTGGGGCATCTAGCTTTCACAGGACCTAGGGC-TCCTCCTCCCA  999
      |||||||||||||||||||| ||||||||| ||||||| |||||||||||
seq2  CCTACACTGGGGCATCTAGC-TTCACAGGA-CTAGGGCTTCCTCCTCCCA  997

seq1  TTGATGCTAGATGAGGCCATCCTCTTCTACATATGCAATGGAGTCATGGG  1049
      |||||||||||||| ||||| ||| |||||||||||||||||||||||||
seq2  TTGATGCTAGATGA-GCCAT-CTC-TCTACATATGCAATGGAGTCATGGG  1044

seq1  TCTCTCCATGTGTATATTTTGGCTGGTGGTTTAAGAACAAAGAAAAACTT  1099
      ||||||||||||||| | ||||||||| | ||||||||||||||||   |
seq2  TCTCTCCATGTGTAT-TATTGGCTGGT-GATTAAGAACAAAGAAAA--CT  1090

seq1  TGCAATTCTCCTCAGAAAAACAATGTTAGC  1129
      |||||||||| ||||||||   ||||||||
seq2  TGCAATTCTCTTCAGAAAA--CATGTTAGC  1118


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