BAC Information

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BAC

Clone NameB6Ng01-349I21
Chromosome3 (Build37)
Map Location 51,588,927 - 51,734,521
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I21.bB6Ng01-349I21.g
ACCGA130516GA130517
length1,1251,003
definitionB6Ng01-349I21.b B6Ng01-349I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,588,927 - 51,590,044)(51,733,548 - 51,734,521)
sequence
gaattccaaacgccaaggaataaaacagatattctgaaagcctctggaag
cttcctgagggggcctgaatgggaagcttctgaaagcctctggaagcttc
ctgagggggtctgaatgggaagcttctggaagcttcctgagggggtctga
atggggcagagtcagctttctgacaggaacagaggcggttcacctccgtt
cctgtgaagcatggagaggttcagacttcctttttaaaggcatttgcagc
ttggtgtcctacattcagttagactaagtatgaatcgacctccccacgtg
caagtgctcaaaaaaccatctctcctctctcctcagcgttagatcaaaga
cctgtagctgcccatttccctcaggccctgctccctgcctctctctctgg
gacagatgtggccttgcaggctgcccatcgtccttacagatgtgagatat
gctcatggtcctacttactgcctgctttcatggctcctggtacataggtt
aggtcaggcaaggtcacatggtgtgggacttaccctggtgccctgaaacc
ttccaagacagagaaatgccatttgtcataggaatctgaagggaacaaag
gatctagaggctcctaatatcgtctagtaggccacatggctgctcatagc
catgattctatgtctccctctctcttcaagacctcattgcactgtctgca
gtacaatgttccatcttttctaagcccctcccactcaaggtccaaccatg
gttgcgcacggcagtgacatactctctcctaataaagtccttgaagtgta
atttgctgtcagctccttccagtgaacacgtttttctaagttatagcagt
caggcactgatcagaaaacggcacttccctgaaatgggtttctaaacgga
agctagaagagacggggaatctgcagcaagggatcccatccaggagcaat
gcagcaaagggctctgccactggcttccagccatcttaacacctctgcag
acggaagctgagggcacaggagtgctccattgacgactacgaaactcatc
ctgtatcgctactgtcatgcgaactgattgcaaatgtggaggttctggtc
gaatggcttaccgctgcgcaacagg
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtgaaactcccgtcccgagtttcctcccgggttttttcttcccggatt
ttttctcgtcccggaatttctcgtcccgggtttcagcaccaactcttatt
aacgcgttctcacgcccggccaggaagaacacagcaaaccagaatcttct
gcggcaaagctttattgcttacatcttcaggagccagagtgcaagagagc
aaggaagggaatggcgaaaccccatccctttttaaggagaattatcctcc
acctaggacgtattactccctgattggctgcagcccatcggcccagttgt
catcacgggaaaggcagaacacatggtgggaaaactgcccctgcatgtgt
gcagactatgtttaccacttaaaacacagctgtcagtgccatcttataat
ggcaaatgtgagggcggctcctcacaaagtttctcctatcactgggaatc
tctgagctcacaatctgtctcataacatgaggctttttttttttttttta
ctactgtgttttgaagttttgacatcagcaattattagctgaggagaatg
caggtgtgtatctgtcaagatgctcactgacaacctgtagacaacctatt
aaaggtctgcttctggctgttggcacttccccgattcctggtcctggcat
catgggtactgacagaatggtccagctctggtatcgactaggcattcacc
acagacaagactggaggccactctagacttaccaaatgagagctgcgatg
ggttggatattgctcagcccaggaggggcactatgaggaggagtggcctt
gtagaggatcactgtgggtgtgggccttagacccttgtcctagctgcctg
cagcagtatactgctagtcagccttcatgctgaagatgtagagagagctc
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51588927_51590044
seq2: B6Ng01-349I21.b_46_1170

seq1  GAATTCCAAAACGCCAAGGAATAAAACAGATATTCTGAAAGCCTCTGGAA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCC-AAACGCCAAGGAATAAAACAGATATTCTGAAAGCCTCTGGAA  49

seq1  GCTTCCTGAGGGGGCCTGAATGGGAAGCTTCTGAAAGCCTCTGGAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGAGGGGGCCTGAATGGGAAGCTTCTGAAAGCCTCTGGAAGCTT  99

seq1  CCTGAGGGGGTCTGAATGGGAAGCTTCTGGAAGCTTCCTGAGGGGGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGGGTCTGAATGGGAAGCTTCTGGAAGCTTCCTGAGGGGGTCTG  149

seq1  AATGGGGCAGAGTCAGCTTTCTGACAGGAACAGAGGCGGTTCACCTCCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCAGAGTCAGCTTTCTGACAGGAACAGAGGCGGTTCACCTCCGT  199

seq1  TCCTGTGAAGCATGGAGAGGTTCAGACTTCCTTTTTAAAGGCATTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAAGCATGGAGAGGTTCAGACTTCCTTTTTAAAGGCATTTGCAG  249

seq1  CTTGGTGTCCTACATTCAGTTAGACTAAGTATGAATCGACCTCCCCACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTCCTACATTCAGTTAGACTAAGTATGAATCGACCTCCCCACGT  299

seq1  GCAAGTGCTCAAAAAACCATCTCTCCTCTCTCCTCAGCGTTAGATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCTCAAAAAACCATCTCTCCTCTCTCCTCAGCGTTAGATCAAAG  349

seq1  ACCTGTAGCTGCCCATTTCCCTCAGGCCCTGCTCCCTGCCTCTCTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCTGCCCATTTCCCTCAGGCCCTGCTCCCTGCCTCTCTCTCTG  399

seq1  GGACAGATGTGGCCTTGCAGGCTGCCCATCGTCCTTACAGATGTGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGTGGCCTTGCAGGCTGCCCATCGTCCTTACAGATGTGAGATA  449

seq1  TGCTCATGGTCCTACTTACTGCCTGCTTTCATGGCTCCTGGTACATAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGTCCTACTTACTGCCTGCTTTCATGGCTCCTGGTACATAGGT  499

seq1  TAGGTCAGGCAAGGTCACATGGTGTGGGACTTACCCTGGTGCCCTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGGCAAGGTCACATGGTGTGGGACTTACCCTGGTGCCCTGAAAC  549

seq1  CTTCCAAGACAGAGAAATGCCATTTGTCATAGGAATCTGAAGGGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGACAGAGAAATGCCATTTGTCATAGGAATCTGAAGGGAACAAA  599

seq1  GGATCTAGAGGCTCCTAATATCGTCTAGTAGGCCACATGGCTGCTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGAGGCTCCTAATATCGTCTAGTAGGCCACATGGCTGCTCATAG  649

seq1  CCATGATTCTATGTCTCCCTCTCCCTTCAAGACCTCATTGCACTGTCTGC  700
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATGATTCTATGTCTCCCTCTCTCTTCAAGACCTCATTGCACTGTCTGC  699

seq1  AGTACAATGTTCCATCTTTTCTAAGCCCCTCCCACTCAAGGTCCAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATGTTCCATCTTTTCTAAGCCCCTCCCACTCAAGGTCCAACCAT  749

seq1  GGTTGCGCACGGCAGTGACATACTCTCTCCTAATAAAGTCCTTGAAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCGCACGGCAGTGACATACTCTCTCCTAATAAAGTCCTTGAAGTGT  799

seq1  AATTTGCTGTCAGCTCCTTCCAGTGAACACG-TTTTCTAAGTTATAGCAG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTTGCTGTCAGCTCCTTCCAGTGAACACGTTTTTCTAAGTTATAGCAG  849

seq1  TCAGGCAGTGATCAGAAAA-GGCACTTCCCTGAAATGGGTTTCTAAACGG  898
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAGGCACTGATCAGAAAACGGCACTTCCCTGAAATGGGTTTCTAAACGG  899

seq1  -AGCTAGAAGAGACGGGGAATCTGCAAGCAAGGGATCCCACACAGGAGCA  947
       |||||||||||||||||||||||| ||||||||||||||  ||||||||
seq2  AAGCTAGAAGAGACGGGGAATCTGC-AGCAAGGGATCCCATCCAGGAGCA  948

seq1  ATGCAGCAAAGGGCTCTGCCACCGGCTCCCAGCCATCTTAGCACCTCTGC  997
      |||||||||||||||||||||| |||| |||||||||||| |||||||||
seq2  ATGCAGCAAAGGGCTCTGCCACTGGCTTCCAGCCATCTTAACACCTCTGC  998

seq1  AGACGGAAGCTGAAGGGCACAGGAGTG-TCC-TTGAAGACAAAGAAACTC  1045
      |||||||||||| |||||||||||||| ||| |||| ||| | |||||||
seq2  AGACGGAAGCTG-AGGGCACAGGAGTGCTCCATTGACGACTACGAAACTC  1047

seq1  ATCCTGTATCGC--ATGTC-TGCAAATGAATGGCAAAAGGTGAAGGTTCT  1092
      ||||||||||||   |||| ||| ||   || || ||| ||| |||||||
seq2  ATCCTGTATCGCTACTGTCATGCGAACTGATTGC-AAATGTGGAGGTTCT  1096

seq1  G--TGGATGGCTTACGGCTG-GGAACAGG  1118
      |   | ||||||||| |||| | ||||||
seq2  GGTCGAATGGCTTACCGCTGCGCAACAGG  1125

seq1: chr3_51733548_51734521
seq2: B6Ng01-349I21.g_98_1069 (reverse)

seq1  CAAGAGCTCTCTCTACATCTTCA-CCTGAAGGCTG-CTAGCAGAATACTG  48
      ||||||||||||||||||||||| | ||||||||| ||||||| ||||||
seq2  CAAGAGCTCTCTCTACATCTTCAGCATGAAGGCTGACTAGCAGTATACTG  50

seq1  GCTTCCAGGCAGCTAGGACAAGGGTCTTAAAGCCCACACCCACAGTGTTC  98
         | ||||||||||||||||||||| ||| |||||||||||||||| ||
seq2  --CTGCAGGCAGCTAGGACAAGGGTC-TAAGGCCCACACCCACAGTGATC  97

seq1  CTCTAACAAGGCCACACCTCCTCATAGTGCCCCTCCCTGGGCTGAGC-AT  147
      |||| |||||||||| |||||||||||||||||| |||||||||||| ||
seq2  CTCT-ACAAGGCCACTCCTCCTCATAGTGCCCCT-CCTGGGCTGAGCAAT  145

seq1  ATCCAAACCATCGCAGCTCTCATTTGGTAAGTCTAGAGTGGCCTCCAGGC  197
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCAACCCATCGCAGCTCTCATTTGGTAAGTCTAGAGTGGCCTCCAGTC  195

seq1  TTGTCTGTGGTGAATGCCTAGTCGATACCAGAGCTGGACCATTCTGTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGGTGAATGCCTAGTCGATACCAGAGCTGGACCATTCTGTCAG  245

seq1  TACCCATGATGCCAGGACCAGGAATCGGGGAAGTGCCAACAGCCAGAAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGATGCCAGGACCAGGAATCGGGGAAGTGCCAACAGCCAGAAGC  295

seq1  AGACCTTTAATAGGTTGTCTACAGGTTGTCAGTGAGCATCTTGACAGATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTAATAGGTTGTCTACAGGTTGTCAGTGAGCATCTTGACAGATA  345

seq1  CACACCTGCATTCTCCTCAGCTAATAATTGCTGATGTCAAAACTTCAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCATTCTCCTCAGCTAATAATTGCTGATGTCAAAACTTCAAAA  395

seq1  CACAGTAGTAAAAAAAAAAAAAAAAGCCTCATGTTATGAGACAGATTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGTAAAAAAAAAAAAAAAAGCCTCATGTTATGAGACAGATTGTG  445

seq1  AGCTCAGAGATTCCCAGTGATAGGAGAAACTCTGTGAGGAGCCGCCCTCA  497
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTCAGAGATTCCCAGTGATAGGAGAAACTTTGTGAGGAGCCGCCCTCA  495

seq1  CATTTGCCATTATAAGATGGCACTGACAGCTGTGTTCTAAGTGGTAAACA  547
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATTTGCCATTATAAGATGGCACTGACAGCTGTGTTTTAAGTGGTAAACA  545

seq1  TAGTCTGCACACATGCAGGGGCAGTTTTCCCACCATGTGTTCTGCCTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCACACATGCAGGGGCAGTTTTCCCACCATGTGTTCTGCCTTTC  595

seq1  CCGTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAGTAATACG  645

seq1  TCCTAGGTGGAGGATAATTCTCCTTAAAAAGGGATGGGGTTTCGCCATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTGGAGGATAATTCTCCTTAAAAAGGGATGGGGTTTCGCCATTC  695

seq1  CCTTCCTTGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGC  745

seq1  TTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGGGCGTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGGGCGTGAG  795

seq1  AACGCGTTAATAAGAGTTGGTGCTGAAACCCGGGACGAGAAATTCCGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGTTAATAAGAGTTGGTGCTGAAACCCGGGACGAGAAATTCCGGGA  845

seq1  CGAGAAAAAATCCGGGAAGAAAAAACCCGGGAGGAAACTCGGGACGGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAAAAATCCGGGAAGAAAAAACCCGGGAGGAAACTCGGGACGGGAG  895

seq1  TTTCACCGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTC  945

seq1  GCGGTAATAAAGGTTCCCGTAAAGCAG  974
      |||||||||||||||||||||||||||
seq2  GCGGTAATAAAGGTTCCCGTAAAGCAG  972