BAC Information

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BAC

Clone NameB6Ng01-349L17
Chromosome3 (Build37)
Map Location 25,234,738 - 25,235,920
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, LOC100039592
Downstream geneNlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L17.bB6Ng01-349L17.g
ACCGA130637GA130638
length1,0491,181
definitionB6Ng01-349L17.b B6Ng01-349L17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagaccgaagtgtggacactatgcccctccttagatttgggta
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcacccta
taggtggaacacattatgagctacagtaccccggagctcttgactctag

gaattctcatgtatttcatcatagctgattttaacctgttgaaattgctg
tggactgatgcttttatctctggtactacaatgtgagcatctaacctata
cttattcccagttacctctgcctatgtttgacctcagtggtagagtttgt
aaaatgacagaggcaagaaatggagaaaggagagcgagtccgactcatat
gcagatagcaccaactatgactaaaacaagaaaatgtggaaaccccataa
tttttattgcagtggagaactgagatagctgagcatattgctagaaatgt
gtagagacacaatcctgtaaaaccatagtcacagtttgtttagctggcaa
agaattaaatggagctgtgaactggtatggaacttttgcaataacaatta
aacaaatttaatattaatggtagttttatttggaaatcatactaacctgg
aaagagctaaactacctttcatttggagagtggatatgaaaaatgagctt
agtttctataatgcaatattataaagtaataaaaatgttatcagaatata
aagacaaatgattttgaactgtgtattgttaggcaaataaagcacatgtg
taaaatttgcttagtgtacaatttcagttccgtgggtttttttggttttt
gtttgtttgctttaaagagaaagtaaagccatgacaatagtaaaatataa
gtctgcacctaattaatttttaaatggaaatataatatggagctgaaaac
ataaataagcaaagttaaggtagggagagtccaaaaaattacaaaattct
ctaatgttctttggtaggaattgattgtttttcagtttcctaatacagca
aacagaagactaaacaatgaaaaacttataatatgtgtaaaagttacata
tatacatatatatcgtataatgtttcagagacactttattcaggtttccc
agggaaagcatcatgaatgtattcaactcattatacaacaatgagtacta
taatacagagttaaataacttttttttgatatagaaagattaacattaaa
tacatttcactaattccttctgttagcaatgcaaagaatatgtttggcca
taccttactaagaatcacagtgtgcttcttagatgactcaaaccttgcca
taggtttcaaacactggtacaggtgtgtcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25234738_25235920
seq2: B6Ng01-349L17.g_66_1246

seq1  GAATTCTCATGTATTTCATCATAGCTGATTTTAACCTGTTGAAATTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTATTTCATCATAGCTGATTTTAACCTGTTGAAATTGCTG  50

seq1  TGGACTGATGCTTTTATCTCTGGTACTACAATGTGAGCATCTAACCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGATGCTTTTATCTCTGGTACTACAATGTGAGCATCTAACCTATA  100

seq1  CTTATTCCCAGTTACCTCTGCCTATGTTTGACCTCAGTGGTAGAGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCCAGTTACCTCTGCCTATGTTTGACCTCAGTGGTAGAGTTTGT  150

seq1  AAAATGACAGAGGCAAGAAATGGAGAAAGGAGAGCGAGTCCGACTCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACAGAGGCAAGAAATGGAGAAAGGAGAGCGAGTCCGACTCATAT  200

seq1  GCAGATAGCACCAACTATGACTAAAACAAGAAAATGTGGAAACCCCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGCACCAACTATGACTAAAACAAGAAAATGTGGAAACCCCATAA  250

seq1  TTTTTATTGCAGTGGAGAACTGAGATAGCTGAGCATATTGCTAGAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGCAGTGGAGAACTGAGATAGCTGAGCATATTGCTAGAAATGT  300

seq1  GTAGAGACACAATCCTGTAAAACCATAGTCACAGTTTGTTTAGCTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACACAATCCTGTAAAACCATAGTCACAGTTTGTTTAGCTGGCAA  350

seq1  AGAATTAAATGGAGCTGTGAACTGGTATGGAACTTTTGCAATAACAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAATGGAGCTGTGAACTGGTATGGAACTTTTGCAATAACAATTA  400

seq1  AACAAATTTAATATTAATGGTAGTTTTATTTGGAAATCATACTAACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTTAATATTAATGGTAGTTTTATTTGGAAATCATACTAACCTGG  450

seq1  AAAGAGCTAAACTACCTTTCATTTGGAGAGTGGATATGAAAAATGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTAAACTACCTTTCATTTGGAGAGTGGATATGAAAAATGAGCTT  500

seq1  AGTTTCTATAATGCAATATTATAAAGTAATAAAAATGTTATCAGAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTATAATGCAATATTATAAAGTAATAAAAATGTTATCAGAATATA  550

seq1  AAGACAAATGATTTTGAACTGTGTATTGTTAGGCAAATAAAGCACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATGATTTTGAACTGTGTATTGTTAGGCAAATAAAGCACATGTG  600

seq1  TAAAATTTGCTTAGTGTACAATTTCAGTTCCGTGGGTTTTTTTGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGCTTAGTGTACAATTTCAGTTCCGTGGGTTTTTTTGGTTTTT  650

seq1  GTTTGTTTGCTTTAAAGAGAAAGTAAAGCCATGACAATAGTAAAATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGCTTTAAAGAGAAAGTAAAGCCATGACAATAGTAAAATATAA  700

seq1  GTCTGCACCTAATTAATTTTTAAATGGAAATATAATATGGAGCTGAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACCTAATTAATTTTTAAATGGAAATATAATATGGAGCTGAAAAC  750

seq1  ATAAATAAGCAAAGTTAAGGTAGGGAGAGTCCAAAAAATTACAAAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGCAAAGTTAAGGTAGGGAGAGTCCAAAAAATTACAAAATTCT  800

seq1  CTAATGTTCTTTGGTAGGAATTGATTGTTTTTCAGTTTCCTAATACAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTCTTTGGTAGGAATTGATTGTTTTTCAGTTTCCTAATACAGCA  850

seq1  AACAGAAGACTAAACAATGAAAAACTTATAATATGTGTAAAAGTTACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGACTAAACAATGAAAAACTTATAATATGTGTAAAAGTTACATA  900

seq1  TATACATATATATCGTATAATGTTTCAGGAGACACTTTATTCAGGTTTCC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATACATATATATCGTATAATGTTTCA-GAGACACTTTATTCAGGTTTCC  949

seq1  CAGGGAAAGCATCAATGAATGTATTCAACTCATTATACAACAATGAGTTA  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||  
seq2  CAGGGAAAGCATC-ATGAATGTATTCAACTCATTATACAACAATGAGT--  996

seq1  ACTATAAATACAGAAGTTTAAATAACTTTTTTTGAATATAAGAAAGATTA  1050
      ||||| ||||||||   ||||||||||||||||  |||| ||||||||||
seq2  ACTAT-AATACAGA--GTTAAATAACTTTTTTTTGATAT-AGAAAGATTA  1042

seq1  ACATTAAATACATTTCACTAATTCTTTCTGGTAGCAATGC-AAGATAATG  1099
      |||||||||||||||||||||||| ||||| ||||||||| ||||  |||
seq2  ACATTAAATACATTTCACTAATTCCTTCTGTTAGCAATGCAAAGAATATG  1092

seq1  TTTGCCAATA-CTTACTA--GATCACAGGTGTTGCTCCCTTAGATGACAT  1146
      |||| | ||| |||||||   |||||| ||| ||||  |||||||||| |
seq2  TTTGGCCATACCTTACTAAGAATCACA-GTG-TGCT-TCTTAGATGAC-T  1138

seq1  CAAA-CTTG-CATAGTGTTC-AACACT-GTACAG--TTGTCGC  1183
      |||| |||| |||||  ||| |||||| ||||||   ||||||
seq2  CAAACCTTGCCATAGGTTTCAAACACTGGTACAGGTGTGTCGC  1181


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