BAC Information

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BAC

Clone NameB6Ng01-349P09
Chromosome3 (Build37)
Map Location 62,293,383 - 62,388,254
singlet/doubletdoublet
Overlap geneDhx36, Gpr149
Upstream geneLOC669910, LOC676965, 4631416L12Rik
Downstream geneLOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349P09.bB6Ng01-349P09.g
ACCGA130786GA130787
length1,1991,152
definitionB6Ng01-349P09.b B6Ng01-349P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,293,383 - 62,294,580)(62,387,096 - 62,388,254)
sequence
gaattccaaggatttaaattaataactccacgagtatcagatccatgcta
gcaactgcacggttctgctgtcacagttacaggttaggggagatctggga
ttagcatttaagttgtatgtgttctgcctagtgctatagtgactccatag
atctatagcggacgttagagacaaaggaagtccacgtgtccaggaattat
tcacttgcactatgagctcttgaaaggcagagggtaagaaagggcaaagg
aaagctgaagctagtctttgacccccccccccccaatagggttcagagga
caacattcagatggaatgaggaggatgagtggagtcagatggaagcgatg
cctctccctgctctggcactgactagttgtggtcttttagaaggcattga
tcttccaggctttaatcagatttgtgcagttcatactcttaacctattat
taccatgagaatttttttaaaaaaaaagtgataaagtgcctggtatatag
caaacaccaaaatgtggaaatcacctttcctatttggtaccattggccag
ggtctccctaagtctttactacatataaaggcaccaacctgaggttcagc
aatgtgagacagactgagatgcaattagaagtttaagtacaaagctcgtt
ccttcccagtgacttcaaacactcagaagtatccttcacctacttctcag
ccactcagtcacaactctccatgttctgtcctactagtcatctagccagt
gtctctgtcctcctacttcctgctgtgctgctgccttctcaaggaaggag
ctatctctgactgacaaaaaaaaaatctctacccaaaagatcatcctcct
gcaccctccctactcctgaagctggagggtgacacttttcttttgcatca
gacccctttctaacagttcctgcaaatttaaggaggcaatcattatgaaa
tgtagattgctgatactccatcatttaccgtcacataccaagctgttgtg
tataatctcttacaaaggaactgtagtattagcatgataaaagaagagag
acagctcaaagagacttaagtgcataaaagtttatggcagactataaaac
caagacctcttgtgtactacctccttagaaagttcctccttcctggatta
ccttccctctccttgctgcccacttcatgggcgtgcatctctcaatttc
gaattccctggaattgaagctgcagtcagttataaactgaccaaataggg
tgctgggaactaaagctcgatagtccagaagaaccgccagagatcttaat
tgccaagtacttctaacactatgaatttcaaaacgtaaataaataaataa
catttgcctggctgattttaggagcagctgtgccttggcactcttagcat
gttgtctcttgtgtgtgacccagtggtgtcattctgccctccccttgcac
ttgaataggtgcccagccacccatttcccttctgtgctaaacagtgctct
ctcctcagcactccttttgagaggtgtgcttctttaccgttgtccacagc
cttcttgactgtctgaaatccagacataaggcatttctgattgtctttca
tccctgaagaaactcaattcttttctgaatgcattatcaaaccaaagtca
tttctttggcagacaagtcacactaagtcctgatgtgtctattgttggct
acaattttgctcctgttgcttaaccacaaaactatccatttggtctgttg
ttaagcccagtagtatcttttgttaaatgtcagcttgatcctattagcta
gctaacttccaccactactgccttttctactgctgtggagaatgctttca
gatgctgatttcaaggacaggtttctataccatccttcctaaattcgtgt
catccatggacctaataatatcactttatattttatctaaacatgcttac
taaaaatttaagcaggaataaatattgattttatagaaataaagaataga
gagtgtatctacaaatcagtaaaaaaaaaaagaaagaaagaaaagaaaag
aaagaaagaaaagaaccaatcaaacaaatggttaaaactacaggatgaga
agcaaggcagagagaagaaagaggagatcaataacatgggaagattgtgt
tctccagagttgtttgaaccacatagctatagtttctgcagatcaaactc
tggttgtcaggtgtctcagtgagtgcccatgcccactgttttgacaactt
atcaacaatatattaaactaatattaaaaaaaaaactaaatggaaagtat
ttgaaggttccaatcacaaggtattaccaatggttgaatgatgactctaa
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62293383_62294580
seq2: B6Ng01-349P09.b_51_1249

seq1  GAATTCCAAGGATTTAAATTAATAACTCCACGAGTATCAGATCCATGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGATTTAAATTAATAACTCCACGAGTATCAGATCCATGCTA  50

seq1  GCAACTGCACGGTTCTGCTGTCACAGTTACAGGTTAGGGGAGATCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCACGGTTCTGCTGTCACAGTTACAGGTTAGGGGAGATCTGGGA  100

seq1  TTAGCATTTAAGTTGTATGTGTTCTGCCTAGTGCTATAGTGACTCCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTAAGTTGTATGTGTTCTGCCTAGTGCTATAGTGACTCCATAG  150

seq1  ATCTATAGCGGACGTTAGAGACAAAGGAAGTCCACGTGTCCAGGAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAGCGGACGTTAGAGACAAAGGAAGTCCACGTGTCCAGGAATTAT  200

seq1  TCACTTGCACTATGAGCTCTTGAAAGGCAGAGGGTAAGAAAGGGCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCACTATGAGCTCTTGAAAGGCAGAGGGTAAGAAAGGGCAAAGG  250

seq1  AAAGCTGAAGCTAGTCTTTGACCCCCCCCCCCCCAATAGGGTTCAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAAGCTAGTCTTTGACCCCCCCCCCCCCAATAGGGTTCAGAGGA  300

seq1  CAACATTCAGATGGAATGAGGAGGATGAGTGGAGTCAGATGGAAGCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCAGATGGAATGAGGAGGATGAGTGGAGTCAGATGGAAGCGATG  350

seq1  CCTCTCCCTGCTCTGGCACTGACTAGTTGTGGTCTTTTAGAAGGCATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTGCTCTGGCACTGACTAGTTGTGGTCTTTTAGAAGGCATTGA  400

seq1  TCTTCCAGGCTTTAATCAGATTTGTGCAGTTCATACTCTTAACCTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGCTTTAATCAGATTTGTGCAGTTCATACTCTTAACCTATTAT  450

seq1  TACCATGAGAATTTTTTTAAAAAAAAAGTGATAAAGTGCCTGGTATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAGAATTTTTTTAAAAAAAAAGTGATAAAGTGCCTGGTATATAG  500

seq1  CAAACACCAAAATGTGGAAATCACCTTTCCTATTTGGTACCATTGGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCAAAATGTGGAAATCACCTTTCCTATTTGGTACCATTGGCCAG  550

seq1  GGTCTCCCTAAGTCTTTACTACATATAAAGGCACCAACCTGAGGTTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCTAAGTCTTTACTACATATAAAGGCACCAACCTGAGGTTCAGC  600

seq1  AATGTGAGACAGACTGAGATGCAATTAGAAGTTTAAGTACAAAGCTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGACAGACTGAGATGCAATTAGAAGTTTAAGTACAAAGCTCGTT  650

seq1  CCTTCCCAGTGACTTCAAACACTCAGAAGTATCCTTCACCTACTTCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGTGACTTCAAACACTCAGAAGTATCCTTCACCTACTTCTCAG  700

seq1  CCACTCAGTCACAACTCTCCATGTTCTGTCCTACTAGTCATCTAGCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGTCACAACTCTCCATGTTCTGTCCTACTAGTCATCTAGCCAGT  750

seq1  GTCTCTGTCCTCCTACTTCCTGCTGTGCTGCTGCCTTCTCAAGGAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCCTCCTACTTCCTGCTGTGCTGCTGCCTTCTCAAGGAAGGAG  800

seq1  CTATCTCTGACTGAC-AAAAAAAAATCTCTACCCAAAAGATCATCCTCCT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGACTGACAAAAAAAAAATCTCTACCCAAAAGATCATCCTCCT  850

seq1  GCACCCTCCCTACTCCTGAAGCTGGAGGGTGACAC-TTTCTTTTGCATCA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCACCCTCCCTACTCCTGAAGCTGGAGGGTGACACTTTTCTTTTGCATCA  900

seq1  GACCCCTTTCTAACAGTTCCTGCAAATTTAAGGAGGCAATCATTATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTTCTAACAGTTCCTGCAAATTTAAGGAGGCAATCATTATGAAA  950

seq1  TGTAGATTGCTGATACTCCATCATTTACCGTCACATACCAAGCTGTTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGCTGATACTCCATCATTTACCGTCACATACCAAGCTGTTGTG  1000

seq1  TATAATCTCTTACAAAGGAACTGTAAGTA-TAGCATGATAAAAAGAAGAG  1047
      |||||||||||||||||||||||| |||| ||||||||| ||||||||||
seq2  TATAATCTCTTACAAAGGAACTGT-AGTATTAGCATGAT-AAAAGAAGAG  1048

seq1  AGAACAGCTCAAAGAGGACTTAAGTGCATAAAAGTTTATGGCCAGACTAT  1097
      || |||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AG-ACAGCTCAAAGA-GACTTAAGTGCATAAAAGTTTATGG-CAGACTAT  1095

seq1  AAAACCAAGACCTC-TGTGTACTACCTCCTTTAGAAGTCCCTTCCTCTCT  1146
      |||||||||||||| ||||||||||||||||   |||| || ||||  ||
seq2  AAAACCAAGACCTCTTGTGTACTACCTCCTTAGAAAGTTCC-TCCTTCCT  1144

seq1  GAAATACACTCCCCTCTCCTTGCTGCCCACTTTCATGG--CTGCATCTC-  1193
      | | ||| || ||||||||||||||||||| |||||||   |||||||| 
seq2  GGATTAC-CTTCCCTCTCCTTGCTGCCCAC-TTCATGGGCGTGCATCTCT  1192

seq1  --ATTTC  1198
        |||||
seq2  CAATTTC  1199

seq1: chr3_62387096_62388254
seq2: B6Ng01-349P09.g_68_1219 (reverse)

seq1  GTTTAGATTCATCAAATTCAA-CATTGGTTATTACTTTGTGATGGGAACT  49
      ||||||| |||||  |||||| |||||| || ||| ||||||| ||||| 
seq2  GTTTAGAGTCATC--ATTCAACCATTGG-TAATACCTTGTGATTGGAACC  47

seq1  TTCAAATACTTTCCATTTAG-TTTTTTTTTAATATTAGTTTTAATATATT  98
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TTCAAATACTTTCCATTTAGTTTTTTTTTTAATATTAG-TTTAATATATT  96

seq1  GTTTGATAAGTTGTCAAAACAGTGGGCATGGGCACTCACTGAGACACCTG  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTGATAAGTTGTCAAAACAGTGGGCATGGGCACTCACTGAGACACCTG  145

seq1  ACAACCAGAGTTTGATCTGCAGAAACTATAGCTATGTGGTTCAAACAACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGAGTTTGATCTGCAGAAACTATAGCTATGTGGTTCAAACAACT  195

seq1  CTGGAGAACACAATCTTCCCATGTTATTTGATCTCCTCTTTCTTCTCTCT  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGAGAACACAATCTTCCCATGTTA-TTGATCTCCTCTTTCTTCTCTCT  244

seq1  GCCTTGCTTCTCATCCTGTAGTTTTAACCATTTGTTTGATTGGTTTCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCTTGCTTCTCATCCTGTAGTTTTAACCATTTGTTTGATTGG-TTCTTT  293

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTTTTTTTTTACTGATTTG  348
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTT--CTTTCTTTTCTTTTCTTTCTTTCTTTTTTTTTTTACTGATTTG  341

seq1  TAGATACACTCTCTATTCTTTATTTCTATAAAATCAATATTTATTCCTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACACTCTCTATTCTTTATTTCTATAAAATCAATATTTATTCCTGC  391

seq1  TTAAATTTTTAGTAAGCATGTTTAGATAAAATATAAAGTGATATTATTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTAGTAAGCATGTTTAGATAAAATATAAAGTGATATTATTAG  441

seq1  GTCCATGGATGACACGAATTTAGGAAGGATGGTATAGAAACCTGTCCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGATGACACGAATTTAGGAAGGATGGTATAGAAACCTGTCCTTG  491

seq1  AAATCAGCATCTGAAAGCATTCTCCACAGCAGTAGAAAAGGCAGTAGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCATCTGAAAGCATTCTCCACAGCAGTAGAAAAGGCAGTAGTGG  541

seq1  TGGAAGTTAGCTAGCTAATAGGATCAAGCTGACATTTAACAAAAGATACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTAGCTAGCTAATAGGATCAAGCTGACATTTAACAAAAGATACT  591

seq1  ACTGGGCTTAACAACAGACCAAATGGATAGTTTTGTGGTTAAGCAACAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTTAACAACAGACCAAATGGATAGTTTTGTGGTTAAGCAACAGG  641

seq1  AGCAAAATTGTAGCCAACAATAGACACATCAGGACTTAGTGTGACTTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTGTAGCCAACAATAGACACATCAGGACTTAGTGTGACTTGTC  691

seq1  TGCCAAAGAAATGACTTTGGTTTGATAATGCATTCAGAAAAGAATTGAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGAAATGACTTTGGTTTGATAATGCATTCAGAAAAGAATTGAGT  741

seq1  TTCTTCAGGGATGAAAGACAATCAGAAATGCCTTATGTCTGGATTTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGGGATGAAAGACAATCAGAAATGCCTTATGTCTGGATTTCAGA  791

seq1  CAGTCAAGAAGGCTGTGGACAACGGTAAAGAAGCACACCTCTCAAAAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGAAGGCTGTGGACAACGGTAAAGAAGCACACCTCTCAAAAGGA  841

seq1  GTGCTGAGGAGAGAGCACTGTTTAGCACAGAAGGGAAATGGGTGGCTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGAGAGAGCACTGTTTAGCACAGAAGGGAAATGGGTGGCTGGG  891

seq1  CACCTATTCAAGTGCAAGGGGAGGGCAGAATGACACCACTGGGTCACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTCAAGTGCAAGGGGAGGGCAGAATGACACCACTGGGTCACACA  941

seq1  CAAGAGACAACATGCTAAGAGTGCCAAGGCACAGCTGCTCCTAAAATCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACAACATGCTAAGAGTGCCAAGGCACAGCTGCTCCTAAAATCAG  991

seq1  CCAGGCAAATGTTATTTATTTATTTACGTTTTGAAATTCATAGTGTTAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAATGTTATTTATTTATTTACGTTTTGAAATTCATAGTGTTAGA  1041

seq1  AGTACTTGGCAATTAAGATCTCTGGCGGTTCTTCTGGACTATCGAGCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGGCAATTAAGATCTCTGGCGGTTCTTCTGGACTATCGAGCTTT  1091

seq1  AGTTCCCAGCACCCTATTTGGTCAGTTTATAACTGACTGCAGCTTCAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCACCCTATTTGGTCAGTTTATAACTGACTGCAGCTTCAATT  1141

seq1  CCAGGGAATTC  1159
      |||||||||||
seq2  CCAGGGAATTC  1152