BAC Information

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BAC

Clone NameB6Ng01-350B09
Chromosome3 (Build37)
Map Location 73,335,744 - 73,474,826
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350B09.bB6Ng01-350B09.g
ACCGA130870GA130871
length1,1821,099
definitionB6Ng01-350B09.b B6Ng01-350B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,335,744 - 73,336,943)(73,473,706 - 73,474,826)
sequence
gaattcctagatgaaaagatatgatgtttcctagtatgatgtttcctgca
tgatggttcctagtgattctctaggctttgaagccacttcgttttataat
caatacactgctagtatggtcaaaattagggacagggttggtgtttgtat
gtgtacaacatgacctaggagaatttgctacctgaattaggtggcataaa
gtcacaagtacaaggcttgcacacgaactgtagcatcgtaacaggcaccc
agacatgagtagatttccagtccttagaacaactaaatgccattcacttc
ttggatgtaccatttatggcgtggaacacagtaactaggcagcaacacca
gccaaaactaaaacaaaacatcatccatcaaagtccatagttcttggaaa
gtccctaaatatactacccttgctctttgggttttatagttccatttttg
tctagttgttctttctaaatgaagtttgtcagccctggatgtagtttttg
tactaatgaggtcaccctgagaatgctttgagactgcatttggttggttc
caaacacccagtatagtggccggctggccaataaaaacgtgctaagtgcc
agagtgctctcacggatgccttacaacaagcaaaggctaacactgagcag
tagcccctgctggtaccagggagtgcgctgtatcttctctaatcatgatg
cttgaagcggcatatgccaagtgttggaaattggctcctggagactgatg
cctggcctgtagataactgcagattccctactcctgacaaataaatgcag
aacgtgaatcctcttattgattctgtcactgtgacttttctctaataagt
actgttcccaaatggccaagggtgaatcttgggtgcatattgcctttagc
agattaggcaacatagcattaccagaagtttaaaggtgctaatgtgtcta
ctcatgatggcacacacatcaacaaactacacttcactatctgtagcatt
gcacatatagcatatctcacatgtagtttatcacatctgctgtgctgact
acatgtgttactagaaaaaagtacctattttgccacatgttctttctatg
ccaagtacctttggaggattttgcaaacctggcatctatggatcagcaat
tcaactcactaattgaattttcagtgtatttg

gaattcagtcccagcactcatatgaaattgctcaaagctttaactgaacc
ccaaggggcccaatgctctctaatggcctcctcttacagttggtacaaaa
gacacacagacacacacacaaacacacaaacacacacacacagacacaca
tacacacacacatatcagtgcaaacaaatgaataagtactaaaataaaag
tcaattgaaaaaaggataaaacaataagcaaatgataaaaattcaaaaac
aacacctgaaatccaattacttcatcaaaccaaccaataccatatttttg
atccagaaccagcatggttacagacctataatctgagctttggacagtga
agccagaaggatccaaagttcatgatcatccacagcagcatagatgattt
gatatcatcttatgtttcatgaaaccctgccttgaaaagaaaattcacac
acacacacacacacacacacacacacacacacactcacacacacacactc
tctctctcctctctctctctctctctctctctctctctctctcacacaca
cacacacacacacacacacacacacacacacacacactatctacattcag
gaaggattctgtgcagcccaattcttgatgaccatattaatactttctaa
aggtttttctagttcccctcttctcttttcttaacaataagactagaaaa
ttaaatacctctccccatttcctatatttctctctttgctccacattttc
actagtccactacccttgtgacctcatgcctcacactttcacagcacaaa
ctcatttctgcattcccaggtatcagctcattctcagccatcttactttc
tctggattcttggttatcagcatcattcaatattgacacacttgccaagg
cccaggctaagtgtgaggagggtcctgaaaaagcgggcatggcacatgtc
tgattcataatgagtcagagtcagtagtagatgcagctgtcattcagtac
tctctctggtcatgagatctcatcatctttctctttctcattctttgttt
ctcaccatctcatgcctctccaccagaagctctgacccagtcttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73335744_73336943
seq2: B6Ng01-350B09.b_49_1230

seq1  GAATTCCTAGATGAAAAGATATGATGTTTCCTAGTATGATGTTTCCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGATGAAAAGATATGATGTTTCCTAGTATGATGTTTCCTGCA  50

seq1  TGATGGTTCCTAGTGATTCTCTAGGCTTTGAAGCCACTTCGTTTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTCCTAGTGATTCTCTAGGCTTTGAAGCCACTTCGTTTTATAAT  100

seq1  CAATACACTGCTAGTATGGTCAAAATTAGGGACAGGGTTGGTGTTTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACTGCTAGTATGGTCAAAATTAGGGACAGGGTTGGTGTTTGTAT  150

seq1  GTGTACAACATGACCTAGGAGAATTTGCTACCTGAATTAGGTGGCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAACATGACCTAGGAGAATTTGCTACCTGAATTAGGTGGCATAAA  200

seq1  GTCACAAGTACAAGGCTTGCACACGAACTGTAGCATCGTAACAGGCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGTACAAGGCTTGCACACGAACTGTAGCATCGTAACAGGCACCC  250

seq1  AGACATGAGTAGATTTCCAGTCCTTAGAACAACTAAATGCCATTCACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAGTAGATTTCCAGTCCTTAGAACAACTAAATGCCATTCACTTC  300

seq1  TTGGATGTACCATTTATGGCGTGGAACACAGTAACTAGGCAGCAACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTACCATTTATGGCGTGGAACACAGTAACTAGGCAGCAACACCA  350

seq1  GCCAAAACTAAAACAAAACATCATCCATCAAAGTCCATAGTTCTTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACTAAAACAAAACATCATCCATCAAAGTCCATAGTTCTTGGAAA  400

seq1  GTCCCTAAATATACTACCCTTGCTCTTTGGGTTTTATAGTTCCATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAAATATACTACCCTTGCTCTTTGGGTTTTATAGTTCCATTTTTG  450

seq1  TCTAGTTGTTCTTTCTAAATGAAGTTTGTCAGCCCTGGATGTAGTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGTTCTTTCTAAATGAAGTTTGTCAGCCCTGGATGTAGTTTTTG  500

seq1  TACTAATGAGGTCACCCTGAGAATGCTTTGAGACTGCATTTGGTTGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGAGGTCACCCTGAGAATGCTTTGAGACTGCATTTGGTTGGTTC  550

seq1  CAAACACCCAGTATAGTGGCCGGCTGGCCAATAAAAACGTGCTAAGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCCAGTATAGTGGCCGGCTGGCCAATAAAAACGTGCTAAGTGCC  600

seq1  AGAGTGCTCTCACGGATGCCTTACAACAAGCAAAGGCTAACACTGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTCTCACGGATGCCTTACAACAAGCAAAGGCTAACACTGAGCAG  650

seq1  TAGCCCCTGCTGGTACCAGGGAGTGCGCTGTATCTTCTCTAATCATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTGCTGGTACCAGGGAGTGCGCTGTATCTTCTCTAATCATGATG  700

seq1  CTTGAAGCGGCATATGCCAAGTGTTGGAAATTGGCTCCTGGAGACTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCGGCATATGCCAAGTGTTGGAAATTGGCTCCTGGAGACTGATG  750

seq1  CCTGGCCTGTAGATAACTGCAGATTCCCTACTCCTGACAAATAAATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTGTAGATAACTGCAGATTCCCTACTCCTGACAAATAAATGCAG  800

seq1  AACGTGAATCCTCTTATTGATTCTGTCACTGTGACTTTTCTCTAATAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAATCCTCTTATTGATTCTGTCACTGTGACTTTTCTCTAATAAGT  850

seq1  ACTGTTCCCAAATGGCCAAGGGTGAATCTTGGGTGCATATTGCCTTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCCAAATGGCCAAGGGTGAATCTTGGGTGCATATTGCCTTTAGC  900

seq1  AGATTAGGCAACATAGCATTACCAGAAGTTTAAAGGTGCTAATGTGTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGCAACATAGCATTACCAGAAGTTTAAAGGTGCTAATGTGTCTA  950

seq1  CTCATGATGGCACAACACATCAACCAAACTACCACTTCCACTATCTGTAG  1000
      ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||
seq2  CTCATGATGGCAC-ACACATCAA-CAAACTA-CACTT-CACTATCTGTAG  996

seq1  CCATTGCACATATAGCATATCCTCACATGGTAGTTTTATCACATCTGCCT  1050
       ||||||||||||||||||| ||||||| |||| ||||||||||||| ||
seq2  -CATTGCACATATAGCATAT-CTCACAT-GTAG-TTTATCACATCTG-CT  1041

seq1  GTTGCTGACTAACATGTTGTTTACTTAGAAAAAAATTACATATTTTGCAA  1100
      | |||||||| ||||||   |||| ||| |||||| ||| |||||||| |
seq2  G-TGCTGACT-ACATGT--GTTAC-TAG-AAAAAAGTACCTATTTTGCCA  1085

seq1  CATG-TCTTTCTATGCAAGTTACTTTTGAAAGATTTTGCAAA-CTGGCAT  1148
      |||| ||||||||||| |  ||| |||| | ||||||||||| |||||||
seq2  CATGTTCTTTCTATGCCAAGTACCTTTGGAGGATTTTGCAAACCTGGCAT  1135

seq1  CTATGGTATCAGCATATTCATTTCCACTAATATGTATTTTTCAGTGTATT  1198
      |||||| ||||||| |||||  | ||||||| || | |||||||||||||
seq2  CTATGG-ATCAGCA-ATTCAACT-CACTAAT-TG-AATTTTCAGTGTATT  1180

seq1  TG  1200
      ||
seq2  TG  1182


seq1: chr3_73473706_73474826
seq2: B6Ng01-350B09.g_70_1168 (reverse)

seq1  ATAA-AAGACTGGGTTCAGAGGCTCTCTGGTTGGGAGAAGGCATGAGAAG  49
      |||| ||||||||| ||||| ||| ||||||  |||| ||||||||| | 
seq2  ATAATAAGACTGGG-TCAGA-GCT-TCTGGT--GGAG-AGGCATGAG-AT  43

seq1  GGTGAGAAAACAAAAGAATGAAGAAAGGAGAAAAAAGAATGATGAGAATC  99
      |||||||||   |||||||| ||||| ||||||     |||||||| |||
seq2  GGTGAGAAA--CAAAGAATG-AGAAA-GAGAAA----GATGATGAG-ATC  84

seq1  TTCATTGAACAGAGAGAGTACCTGAATTGACAGCTTGCATCTACTACTGA  149
       ||| ||| ||||||||||| ||||| ||||||| |||||||||||||||
seq2  -TCA-TGACCAGAGAGAGTA-CTGAA-TGACAGC-TGCATCTACTACTGA  129

seq1  CTCTGACTCATTATTGAATCAGCATTGTTCCCATGCCCGCCTTTTTCAGG  199
      ||||||||||||| ||||||||   || | ||||||||| ||||||||||
seq2  CTCTGACTCATTA-TGAATCAGACATG-TGCCATGCCCG-CTTTTTCAGG  176

seq1  ACCCTCCTCACACTTAGCCTGGGCCTTGGCAAGTGTGTCAATATTGAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTCACACTTAGCCTGGGCCTTGGCAAGTGTGTCAATATTGAATG  226

seq1  ATGCTGATAACCAAGAATCCAGAG-AAGTAAGATGGCTGAGAATGAGCTG  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCTGATAACCAAGAATCCAGAGAAAGTAAGATGGCTGAGAATGAGCTG  276

seq1  ATACCTGGGAATGCAGAAATGAGTTTGTGCTGTGAAAGTGTGAGGCATGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGGAATGCAGAAATGAGTTTGTGCTGTGAAAGTGTGAGGCATGA  326

seq1  GGTCACAAGGGTAGTGGACTAGTGAAAATGTGGAGCAAAGAGAGAAATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAGGGTAGTGGACTAGTGAAAATGTGGAGCAAAGAGAGAAATAT  376

seq1  AGGAAATGGGGAGAGGTATTTAATTTTCTAGTCTTATTGTTAAGAAAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGGGAGAGGTATTTAATTTTCTAGTCTTATTGTTAAGAAAAGA  426

seq1  GAAGAGGGGAACTAGAAAAACCTTTAGAAAGTATTAATATGGTCATCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGAACTAGAAAAACCTTTAGAAAGTATTAATATGGTCATCAAG  476

seq1  AATTGGGCTGCACAGAATCCTTCCTGAATGTAGATAGTGTGTGTGTGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGCTGCACAGAATCCTTCCTGAATGTAGATAGTGTGTGTGTGTGT  526

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA  576

seq1  GAGAGAGAGAGAGAGGAGAGAGAGAGTGTGTGTGTGTGAGTGTGTGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGGAGAGAGAGAGTGTGTGTGTGTGAGTGTGTGTGTG  626

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTTTCTTTTCAAGGCAGGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTTTCTTTTCAAGGCAGGGT  676

seq1  TTCATGAAACATAAGATGATATCAAATCATCTATGCTGCTGTGGATGATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAACATAAGATGATATCAAATCATCTATGCTGCTGTGGATGATC  726

seq1  ATGAACTTTGGATCCTTCTGGCTTCACTGTCCAAAGCTCAGATTATAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTGGATCCTTCTGGCTTCACTGTCCAAAGCTCAGATTATAGGT  776

seq1  CTGTAACCATGCTGGTTCTGGATCAAAAATATGGTATTGGTTGGTTTGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCATGCTGGTTCTGGATCAAAAATATGGTATTGGTTGGTTTGAT  826

seq1  GAAGTAATTGGATTTCAGGTGTTGTTTTTGAATTTTTATCATTTGCTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTGGATTTCAGGTGTTGTTTTTGAATTTTTATCATTTGCTTAT  876

seq1  TGTTTTATCCTTTTTTCAATTGACTTTTATTTTAGTACTTATTCATTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCCTTTTTTCAATTGACTTTTATTTTAGTACTTATTCATTTGT  926

seq1  TTGCACTGATATGTGTGTGTGTATGTGTGTCTGTGTGTGTGTGTTTGTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGATATGTGTGTGTGTATGTGTGTCTGTGTGTGTGTGTTTGTGT  976

seq1  GTTTGTGTGTGTGTCTGTGTGTCTTTTGTACCAACTGTAAGAGGAGGCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTGTCTGTGTGTCTTTTGTACCAACTGTAAGAGGAGGCCA  1026

seq1  TTAGAGAGCATTGGGCCCCTTGGGGTTCAGTTAAAGCTTTGAGCAATTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGCATTGGGCCCCTTGGGGTTCAGTTAAAGCTTTGAGCAATTTC  1076

seq1  ATATGAGTGCTGGGACTGAATTC  1121
      |||||||||||||||||||||||
seq2  ATATGAGTGCTGGGACTGAATTC  1099


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