BAC Information

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BAC

Clone NameB6Ng01-350J23
Chromosome3 (Build37)
Map Location 82,350,032 - 82,511,282
singlet/doubletdoublet
Overlap geneNpy2r, LOC100041940
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350J23.bB6Ng01-350J23.g
ACCGA131238GA131239
length1,138834
definitionB6Ng01-350J23.b B6Ng01-350J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,350,032 - 82,351,162)(82,510,449 - 82,511,282)
sequence
gaattctttttctcaaatgctcatatctcccctgcccctgcgctacacac
acacacacacacacacacacacacacacacacacacacactcacacacac
acttctaggggcctgggaactttctgtgtgttttcctttgttgctatact
ggtccattctatacaagtcaacatagatttcaaacagaacgttccaggga
taccagccccactgcccattatgaaaacatggcatttgaaccctggcccc
tttgattggctgtcccattttccctaagctaagagactgacttcatggag
cagttactcagaccatccacggcaaccagagttgagcagacttgcaaaag
ttgcacccacgagctgagtgtaagcacagatttaagggcactgggaagag
aagcgcatttgatttattgactacttccttttttttcttttcaatcacat
tttcttccctctgaaatcctttcgctggagtcttacagctcctctgcagg
aatggctatcgatctgcaagctattaccctgtgaacactctgagctgcat
gcaggcacagtactagccctgggctgggcaaagcactacccaggacacag
aatgtatcattcacaacagcacttctggaaaagtaggagagtgaaagaga
acgtgagggtagacactgccacgcgtgacactcctgaggcccccagtcaa
accagaaagaggcaagggggagagcctttccttgaaacaaggcaaaatga
gacattcaggttatttcaagaaattcaaaactctgaatagcgctgttctc
ttgaacaggtgccccttgactgagtttattacagaagcagtcagtgtaga
aagggaaatgatgcttttttccttctgacgctctaggtgctttctttaat
aggccagaaaccttctcctgcttaactacatgctgaaatcactggaattg
cagttattttctggagatagagtcacctccaggtggggcaaaggtgtgac
atcccttgtctagccctctctttccagtatgttttcccagggaaaacccc
ccagttccatgctacaactatagtgccttgcacctgttggaatctctggt
gaaggggagatgcggtccttaccactgcaccatacagg
gaattcagtaggagctcctcttcattgtcttaaggctctgcagtttggat
cgtaaatgaatcctgaaggccagtgtttggaaagcattgtccccagctca
gactcacttgggagtggcagaacttctagggggtggatcctaatgggaag
aggttagtgttgatggaaacaaggttgggcttctggcttctcttcttttt
cttttacttccacgtatgaatactttttccatcctgtgttcctgccataa
ttctgcatcaaaagcacaaaagcagtgggccaagttaggaggcaaggact
ggagggaaggcccagataacctgcgtatcagatattacattgcaattcat
aacagtagctaaattgctgttatgaagttaacaacagaaataattttatg
gttggggtcaccacacacatgaaacgatgttaaaggttcgcaacattagg
aaggttgagaattgctgtcctaaaaatctctcaggtaattgatactctcc
tgtggagttcttaagaattgtatctaagccacacagtactgaagttagtc
ccgggagcatctagatctttcctagccatgttgtctaacctcaggatctg
ttgtgagagttggtcatggatcattcagataaactccacaccctcccaac
tccagttcctccgaagtttctgattctcagtgcaggtgtacagagtataa
aacacttgtctcactgtggtgaagcaggactgagaaatcaggtccctttc
ttagaaatgctccagtggataaggtgaaatttcattgcattttagaagac
agtcttttccagaacaaaggttatgtatctgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82350032_82351162
seq2: B6Ng01-350J23.b_45_1182

seq1  GAATTCTTTTTCTCAAATGCTCATATCTCCCCTGCCCCTGCGCTACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTCAAATGCTCATATCTCCCCTGCCCCTGCGCTACACAC  50

seq1  ACACACACACACACACACACACACACACACACACACACACTCACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACTCACACACAC  100

seq1  ACTTCTAGGGGCCTGGGAACTTTCTGTGTGTTTTCCTTTGTTGCTATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGGGGCCTGGGAACTTTCTGTGTGTTTTCCTTTGTTGCTATACT  150

seq1  GGTCCATTCTATACAAGTCAACATAGATTTCAAACAGAACGTTCCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTCTATACAAGTCAACATAGATTTCAAACAGAACGTTCCAGGGA  200

seq1  TACCAGCCCCACTGCCCATTATGAAAACATGGCATTTGAACCCTGGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCCCACTGCCCATTATGAAAACATGGCATTTGAACCCTGGCCCC  250

seq1  TTTGATTGGCTGTCCCATTTTCCCTAAGCTAAGAGACTGACTTCATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGCTGTCCCATTTTCCCTAAGCTAAGAGACTGACTTCATGGAG  300

seq1  CAGTTACTCAGACCATCCACGGCAACCAGAGTTGAGCAGACTTGCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTCAGACCATCCACGGCAACCAGAGTTGAGCAGACTTGCAAAAG  350

seq1  TTGCACCCACGAGCTGAGTGTAAGCACAGATTTAAGGGCACTGGGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCACGAGCTGAGTGTAAGCACAGATTTAAGGGCACTGGGAAGAG  400

seq1  AAGCGCATTTGATTTATTGACTACTTCCTTTTTTTTCTTTTCAATCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCATTTGATTTATTGACTACTTCCTTTTTTTTCTTTTCAATCACAT  450

seq1  TTTCTTCCCTCTGAAATCCTTTCGCTGGAGTCTTACAGCTCCTCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCTCTGAAATCCTTTCGCTGGAGTCTTACAGCTCCTCTGCAGG  500

seq1  AATGGCTATCGATCTGCAAGCTATTACCCTGTGAACACTCTGAGCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATCGATCTGCAAGCTATTACCCTGTGAACACTCTGAGCTGCAT  550

seq1  GCAGGCACAGTACTAGCCCTGGGCTGGGCAAAGCACTACCCAGGACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACAGTACTAGCCCTGGGCTGGGCAAAGCACTACCCAGGACACAG  600

seq1  AATGTATCATTCACAACAGCACTTCTGGAAAAGTAGGAGAGTGAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCATTCACAACAGCACTTCTGGAAAAGTAGGAGAGTGAAAGAGA  650

seq1  ACGTGAGGGTAGACACTGCCACGCGTGACACTCCTGAGGCCCCCAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGGGTAGACACTGCCACGCGTGACACTCCTGAGGCCCCCAGTCAA  700

seq1  ACCAGAAAGAGGCAAGGGGGAGAGCCTTTCCTTGAAACAAGGCAAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAGAGGCAAGGGGGAGAGCCTTTCCTTGAAACAAGGCAAAATGA  750

seq1  GACATTCAGGTTA-TTCAAGAAATTCAAAACTCTGAATAGCGCTGTTCTC  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACATTCAGGTTATTTCAAGAAATTCAAAACTCTGAATAGCGCTGTTCTC  800

seq1  TTGAACAGGTGCCCCTTGACTGAGTTTATTACAGAAGCAGTCAGTGTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGGTGCCCCTTGACTGAGTTTATTACAGAAGCAGTCAGTGTAGA  850

seq1  AAGGGAAATGATGCTTTTTTCCTTCTGACGCTCTAGGTGCTTTCTTTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAATGATGCTTTTTTCCTTCTGACGCTCTAGGTGCTTTCTTTAAT  900

seq1  AAGCCAGAAACCTTCTCCTGCTTTAACTACATGCTGAAATCACTGGAATT  949
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGCCAGAAACCTTCTCCTGC-TTAACTACATGCTGAAATCACTGGAATT  949

seq1  GCAAGTTA-TTTCT-GAGATAGAGTCA-CTCCAGGT-GGGCAAA-GTGTG  994
      || ||||| ||||| |||||||||||| |||||||| ||||||| |||||
seq2  GC-AGTTATTTTCTGGAGATAGAGTCACCTCCAGGTGGGGCAAAGGTGTG  998

seq1  ACATCCC-TGTCTAGCC--CTCCTTCCAGTATTGTTTTCCCAGGGAAAAC  1041
      ||||||| |||||||||  ||| |||||||| ||||||||||||||||||
seq2  ACATCCCTTGTCTAGCCCTCTCTTTCCAGTA-TGTTTTCCCAGGGAAAAC  1047

seq1  CCCCAAGTTCCATGCTACAAACTATAGTTGCCTGCACCTGTTGG-ATCTC  1090
      |||| ||||||||||||| |||||||||  | |||||||||||| |||||
seq2  CCCCCAGTTCCATGCTAC-AACTATAGTGCCTTGCACCTGTTGGAATCTC  1096

seq1  CTGTG-AGGGGAGATGCGGTCTTTAACACTGCAACATACAGG  1131
        ||| ||||||||||||||| ||| ||||||| ||||||||
seq2  TGGTGAAGGGGAGATGCGGTCCTTACCACTGCACCATACAGG  1138

seq1: chr3_82510449_82511282
seq2: B6Ng01-350J23.g_70_903 (reverse)

seq1  GGGCAAATACAT-ACCTTTGTGCTGGGAAAGACTGTCCTTCTAAAATGCA  49
      ||||| |||||| |||||||| |||| ||||||||| |||||||||||||
seq2  GGGCAGATACATAACCTTTGTTCTGGAAAAGACTGT-CTTCTAAAATGCA  49

seq1  ATGAAATTTCACCTTCTCCACTGGAGCATTTCTAAGAAAGGGACCCTGAT  99
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  ATGAAATTTCACCTTATCCACTGGAGCATTTCTAAGAAAGGGA-CCTGAT  98

seq1  TTCTCAGTCCTGCTTCACCACAGTGAGACAAGTG-TTTATACTCTGTACA  148
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTCAGTCCTGCTTCACCACAGTGAGACAAGTGTTTTATACTCTGTACA  148

seq1  CCTGCACTGAGAATCAGAAACTTCGGAGGAACTGGAGTTGGGAGGGTGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGAGAATCAGAAACTTCGGAGGAACTGGAGTTGGGAGGGTGTG  198

seq1  GAGTTTATCTGAATGATCCATGACCAACTCTCACAACAGATCCTGAGGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATCTGAATGATCCATGACCAACTCTCACAACAGATCCTGAGGTT  248

seq1  AGACAACATGGCTAGGAAAGATCTAGATGCTCCCGGGACTAACTTCAGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACATGGCTAGGAAAGATCTAGATGCTCCCGGGACTAACTTCAGTA  298

seq1  CTGTGTGGCTTAGATACAATTCTTAAGAACTCCACAGGAGAGTATCAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGCTTAGATACAATTCTTAAGAACTCCACAGGAGAGTATCAATT  348

seq1  ACCTGAGAGATTTTTAGGACAGCAATTCTCAACCTTCCTAATGTTGCGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGAGATTTTTAGGACAGCAATTCTCAACCTTCCTAATGTTGCGAA  398

seq1  CCTTTAACATCGTTTCATGTGTGTGGTGACCCCAACCATAAAATTATTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACATCGTTTCATGTGTGTGGTGACCCCAACCATAAAATTATTTC  448

seq1  TGTTGTTAACTTCATAACAGCAATTTAGCTACTGTTATGAATTGCAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAACTTCATAACAGCAATTTAGCTACTGTTATGAATTGCAATGT  498

seq1  AATATCTGATACGCAGGTTATCTGGGCCTTCCCTCCAGTCCTTGCCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGATACGCAGGTTATCTGGGCCTTCCCTCCAGTCCTTGCCTCCT  548

seq1  AACTTGGCCCACTGCTTTTGTGCTTTTGATGCAGAATTATGGCAGGAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCCCACTGCTTTTGTGCTTTTGATGCAGAATTATGGCAGGAACA  598

seq1  CAGGATGGAAAAAGTATTCATACGTGGAAGTAAAAGAAAAAGAAGAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGAAAAAGTATTCATACGTGGAAGTAAAAGAAAAAGAAGAGAAG  648

seq1  CCAGAAGCCCAACCTTGTTTCCATCAACACTAACCTCTTCCCATTAGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCCAACCTTGTTTCCATCAACACTAACCTCTTCCCATTAGGAT  698

seq1  CCACCCCCTAGAAGTTCTGCCACTCCCAAGTGAGTCTGAGCTGGGGACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCTAGAAGTTCTGCCACTCCCAAGTGAGTCTGAGCTGGGGACAA  748

seq1  TGCTTTCCAAACACTGGCCTTCAGGATTCATTTACGATCCAAACTGCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCAAACACTGGCCTTCAGGATTCATTTACGATCCAAACTGCAGA  798

seq1  GCCTTAAGACAATGAAGAGGAGCTCCTACTGAATTC  834
      ||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAGACAATGAAGAGGAGCTCCTACTGAATTC  834