Query= MSMg01no045_d20.b1 MSMg01no045_d20.b1 CHROMAT_FILE:
MSMg01no045_d20.b1 PHD_FILE: MSMg01no045_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(517 letters)
>mm_chr3_127861977_127862895
Length = 919
Score = 830 bits (429), Expect = 0.0
Identities = 482/501 (96%), Gaps = 6/501 (1%)
Strand = Plus / Minus
Query: 7 gaattcatttcagatccctgtccccatgtaataagatcctcatcttcccagggttttagg 66
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattcatttcagatatctgtccccatgtaataagatcctcatcttcccagggttttagg 646
Query: 67 caaaagttttattttcttgactttctcctggaaacatcacaaattatagccaaaggtcat 126
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 645 caaaagttttattttcttgactttctcctggaaacatcccaaattatagccaaaggtcat 586
Query: 127 aaaaggctcatcactgcaaaggggttagatgctgacatacaatctcctttgggggacaag 186
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 585 aaaaggctcatcactgcaaaggggttagatgctgacatataatctcctttgggggacaag 526
Query: 187 ttctactatagcttaatttaaaccccatcattcacaacgaaggttggtaaacatcaaaca 246
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 525 ttctactatagcttaatttaaaccccatcattcacaacgaaggttagtaatcatcaaaca 466
Query: 247 tagtcagatagcagagaaaatggcaagtggaaaatct---agtttttaaaatgcattaat 303
|||||||||||||||||||||||| ||||| |||||| ||| |||||||||| |||||
Sbjct: 465 tagtcagatagcagagaaaatggcgagtgggaaatctcctagtctttaaaatgccttaat 406
Query: 304 atatagcattcttgacatctttgcctgcagacgtgaagaacaatgccaacctgcagttag 363
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atatagcattctcgacatctttgcctgcagacgtgaagaacaatgccaacctgcagttag 346
Query: 364 cctcaagctgcacctagcctgagaaat-aggaatgggctaagtttgatagagaactgtta 422
||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 345 cctcaagctgcacctagcctgagaaatgag-aatggactaagcttgatagagaactgtta 287
Query: 423 ctgacagctcatggggccattttacaaagcagaaccaaatgatcaagcaaaatctatgac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctgacagctcatggggccattttacaaagcagaaccaaatgatcaagcaaaatctatgac 227
Query: 483 tcctgaaatcttctttttttt 503
|||||||||||| ||||||||
Sbjct: 226 tcctgaaatctt-tttttttt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_d20.g1 MSMg01no045_d20.g1 CHROMAT_FILE:
MSMg01no045_d20.g1 PHD_FILE: MSMg01no045_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(336 letters)
>mm_chr3_127698812_127699547
Length = 736
Score = 642 bits (332), Expect = 0.0
Identities = 335/336 (99%)
Strand = Plus / Plus
Query: 1 cttagctgtctttgagtctgtttcttttctctgggaatttaagatcggggattttgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagctgtctttgagtctgtttcttttctctgggaatttaagatcggggattttgctgg 260
Query: 61 tgcaggatatgttgagtctgctctgccgccaacttgttatcttttgctgtggactcgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaggatatgttgagtctgctctgccgccaacttgttatcttttgctgtggactcgtag 320
Query: 121 aggtgtatgccatttggtgagctgctgtctcctgtgagtggaggcacttccagaaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aggtgtatgccatttggtgagctgctgtctcctgtgagtggaggcacatccagaaacaaa 380
Query: 181 actcatgtgcacagttaaaacaaaatctcacaccaaaaaccaactgagcagactcttgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcatgtgcacagttaaaacaaaatctcacaccaaaaaccaactgagcagactcttgac 440
Query: 241 tttatattgagatacttcaatgacttcttggctaaggatagctttctaggtcttcaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatattgagatacttcaatgacttcttggctaaggatagctttctaggtcttcaaaaa 500
Query: 301 attattttatttttaatcatgcatatatgtgtatgt 336
||||||||||||||||||||||||||||||||||||
Sbjct: 501 attattttatttttaatcatgcatatatgtgtatgt 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
