Query= MSMg01no045_k18.b1 MSMg01no045_k18.b1 CHROMAT_FILE:
MSMg01no045_k18.b1 PHD_FILE: MSMg01no045_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:41 2005
(650 letters)
>mm_chr3_45323723_45324772
Length = 1050
Score = 1203 bits (622), Expect = 0.0
Identities = 639/645 (99%)
Strand = Plus / Plus
Query: 6 ggaattcaacacaaataccaatttgggaatagaagtgtctctttcagacttgtaaacaaa 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaacacaaaaacaaatttgggaatagaagtgtctctttcagacttgtaaacaaa 265
Query: 66 attttaagacagtctaaaaataggtaaatttataacccagggtctaaattcatgagatgt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attttaagacagtctaaaaataggtaaatttataacccagggtctaaattcatgagatgt 325
Query: 126 gataaattgcaatacaatccattttgcatcaaaactcggcttgtggctttaaaagatacc 185
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 326 gataaattgcaatacaatccattttgcatcaaaactcagcttgtggctttaaaagatacc 385
Query: 186 tatgtgctctgctatgaatgtgtctaaccaactaaatttttgccatgagatcaattatat 245
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 386 tatgtgctctgctatgaatgtgtctaaacaactaaatttttgccatgagatcaattgtat 445
Query: 246 tctcactagaaatgctggaaagctctttctggttcacccctcatgcagggttttgctgtg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctcactagaaatgctggaaagctctttctggttcacccctcatgcagggttttgctgtg 505
Query: 306 ttgtatttgttttgaatgtgctgcacatatgtatatattttatatatgcttccaaagcta 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgtatttgttttgaatgtgctgcacatatgtatatattttatatatgcttccaaagcta 565
Query: 366 taagaaatttgaggttttaattttagtgcagatacatatcttttcaaatgtttttgacta 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taagaaatttgaggttttaattttagtgcagatacatatcttttcaaatgtttttgacta 625
Query: 426 tgtttactgtgtttaaaaatctatttaatatcttttacttatttattaaatctgttatat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtttactgtgtttaaaaatctatttaatatcttttacttatttattaaatctgttatat 685
Query: 486 catctttattgatttataagtttttacatatatattgtgagtaaattattttgtttattt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 catctttattgatttataagtttttacatatatattgtgagtaaattattttgtttattt 745
Query: 546 tgcaattttttttggtttggtaacttattttataccaaaaacataatagtttttgtggaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgcaattttttttggtttggtaacttattttataccaaaaacataatagtttttgtggaa 805
Query: 606 agtcttattatatttcaagtnaaaataatttatatttaatgtcca 650
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 806 agtcttattatatttcaagtaaaaataatttatatttaatgtcca 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_k18.g1 MSMg01no045_k18.g1 CHROMAT_FILE:
MSMg01no045_k18.g1 PHD_FILE: MSMg01no045_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:41 2005
(606 letters)
>mm_chr3_45419148_45420152
Length = 1005
Score = 959 bits (496), Expect = 0.0
Identities = 526/536 (98%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 71 ctcagaactcagtggcagtttctccagtgagaagctgaaagaagccagtttgaatcagta 130
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1005 ctcagaactcagtggcagtttctcccgtgagaagctgaaagaagccagtttgaatcagta 946
Query: 131 agcttgtataggagtttgagccagaacagctaagttgaaccaggcagccagagttgagag 190
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 945 agcttgtatagtagtttgagccagaacagcttagttgaacgaggcagccagagttgagag 886
Query: 191 agaactagaaagggtgagcttattcaacaggaagtctctgagacacaaattacatcagga 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 agaactagaaagggtgagcttattcaacaggaagtctctgagacacaaattacatcagga 826
Query: 251 gaatcaaagttatctttacacaaaactaaatataattcgtctgttagtggatatagagag 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 825 gaatcaaagttatctttacacaaaactaaatataattcgtctgttagtggatatagaggg 766
Query: 311 acagcagagaaataacacacagacaggaactaggctaagaataaccaagaaaacttggta 370
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 765 acaacagagaaataacacacagacaggaactaggctaagaataaccaagagaacttggta 706
Query: 371 atagaatcacaccaatgtattactcattgtgcctagtattttgtataacagagaaatatt 430
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 atagaatcacaccaatg-attactcattgtgcctagtattttgtataacagagaaatatt 647
Query: 431 tttacttttttattgaaaatttttttcatgaattgattcatagcttcattttaatgaacc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tttacttttttattgaaaatttttttcatgaattgattcatagcttcattttaatgaacc 587
Query: 491 tattccatttcaattaggaaattaaataaattactgcattccttccatactacttttcag 550
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 586 tattccatttcaattaggaaattaaataaattactgcatttcttccatactactcttcag 527
Query: 551 aattatcatgtacttttgtaaagagtccatatctaagaatgttatccttgactgca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aattatcatgtacttttgtaaagagtccatatctaagaatgttatccttgactgca 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1005
Length adjustment: 10
Effective length of query: 596
Effective length of database: 995
Effective search space: 593020
Effective search space used: 593020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
