BAC Information

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BAC

Clone NameMSMg01-045N12
Chromosome3 (Build37)
Map Location 94,183,318 - 94,183,664
singlet/doubletsinglet
Overlap geneRorc
Upstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659
Downstream geneLingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045N12.T7 (MSMg01no045_n12.b1)MSMg01-045N12.TJ (MSMg01no045_n12.g1)
ACCAG276372AG276373
length686691
length of high quality
(start - end)
388 (23 - 410)425 (58 - 482)
definitionCHROMAT_FILE: MSMg01no045_n12.b1 PHD_FILE: MSMg01no045_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:53 2005CHROMAT_FILE: MSMg01no045_n12.g1 PHD_FILE: MSMg01no045_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATAGTGCGAGAATCCGCGGAATTCACGGTCACTCTCACCTGTA
TATGGAGTTCAAAGCCAGTCTATGACATTTTGTCACAAACAAAACCAAAT
AAAAGGCCCATGAGAAGGCTCGGTGGGTGAGAGTGCTAGCCACAAAGGCC
TGTGGCATGAGTTCAATTTCCAGCATTGCTAAGGAAGGAATCAGCTACCG
AATGTACATACACACACACACACACAACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACCCTGGGGACTCG
GAGCTCTTTGTGGCCCGTTGCTCAACATAATCATGGCTGTATTCAAGGAA
GAGGACTGGCATGTGACCTCCCATTCCTAGACTTCCTGTCTACTGATTCC
ACACTGACTAGCTCCTAACAGTGAGATGGCTATGTCATACACCATTGACT
GGCCGAGGTAGGGGTCGAAGGGCCTTTGTTTCTTCCTGAGACACCCTCCA
GTCTGCCATGTTCCCTTTCCACCTCCCCTGTGTCTGTACTTTATGACCTG
TGCCCTTCGTCTCTGGACTTCTTACTCTATGGCTCTCCTGATAGTGTTCC
ATCTGGACCCCTTCCCCCTTGAACCTCCAACCCATCGCTTATTCCCTACA
TTCCATCAACTCCTTGTTTCTCTGTCCTCTCTCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTGTTCCAACAGCAATTGGTTATTGCAGAATATTGATATTTG
ACCTATTACATACCATCATTTTAAATAAAATTGATACTCATCCTAAAATT
AAGTTAGAAATTGCTTATATACATGCTTTTGTATCTTCTATAAATTCATG
CATGCATGCATCCCATTTACTGTATTTAAAAACAACCCTTCTATGAGAAG
AAAGTATATGTGAATTGGATTACATGTTTATTCTTTTGAGTTTCTGCCTG
CTTTATCACAGATAATTAAATTATGTGCTGTAGATGGTGTTTTAAAATGT
TGAAGATTGCCTGGAAAAGACCTCTTAAGACAATGCCACGCTAGATTTAT
ATCCCAGATAGATTATAGAACTTATACAAAAATAATTGGCCATTTAATCT
CATTCTTTTTTTTAAAGGTACAAATAAATAGTTTATTTTATTTTTTAAGA
TTTAATCTCATTCTTTACATCATCAAAATAGTAATGGCTTAAAATAATAA
TTTGGTACTTAAAATACATAAATAATTAAACAAATAAATAAATAAATAAA
TAAATAAATGTGCATGTCATATTGAAAAGATTTGCTCTCAATGTCCTCAG
TTTCTACCTGTTCCAACATTGGTGTTAATTCTTGAAGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_n12.b1 MSMg01no045_n12.b1 CHROMAT_FILE:
MSMg01no045_n12.b1 PHD_FILE: MSMg01no045_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:53 2005
         (388 letters)



>mm_chr3_94183282_94184069
          Length = 788

 Score =  584 bits (302), Expect = e-171
 Identities = 346/386 (89%), Gaps = 39/386 (10%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcacggtcactctcacctgtatatggagttcaaagccagtctatgacattttgtc 62
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaattcacggtcactctcagctgtatatggagttcaaagccagtctatgacattttgtc 324

                                                                       
Query: 63  acaaacaaaaccaaataaaaggcccatgagaaggctcggtgggtgagagtgctagccaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaacaaaaccaaataaaaggcccatgagaaggctcggtgggtgagagtgctagccaca 264

                                                                       
Query: 123 aaggcctgtggcatgagttcaatttccagcattgctaaggaaggaatcagctaccgaatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaggcctgtggcatgagttcaatttccagcattgctaaggaaggaatcagctaccgaatg 204

                                                                       
Query: 183 tacatacacacacacacacacaacacacacacacacacacacacacacacacacacacac 242
           |||||                                       ||||||||||||||||
Sbjct: 203 tacat---------------------------------------acacacacacacacac 183

                                                                       
Query: 243 acacacacacacacacacacacaccctggggactcggagctctttgtggcccgttgctca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 acacacacacacacacacacacaccctggggactcggagctctttgtggcccgttgctca 123

                                                                       
Query: 303 acataatcatggctgtattcaaggaagaggactggcatgtgacctcccattcctagactt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 acataatcatggctgtattcaaggaagaggactggcatgtgacctcccattcctagactt 63

                                     
Query: 363 cctgtctactgattccacactgacta 388
           ||||||||||||||||||||||||||
Sbjct: 62  cctgtctactgattccacactgacta 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)