Query= MSMg01no046_a16.b1 MSMg01no046_a16.b1 CHROMAT_FILE:
MSMg01no046_a16.b1 PHD_FILE: MSMg01no046_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
(552 letters)
>mm_chr3_25599079_25600030
Length = 952
Score = 905 bits (468), Expect = 0.0
Identities = 494/508 (97%), Gaps = 13/508 (2%)
Strand = Plus / Minus
Query: 46 agtcccctatcagatttaggattggtaaaaattctttcccaatcttttgttggccctttt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 agtcccctatcagatttaggattggtaaaaattctttcccaatcttttgttggccctttt 893
Query: 106 gtcttattgacagtatcttttgccctacagaagctttgcaattttatgaggtcccatttg 165
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gtcttattgacagaatcttttgccctacagaagctttgcaattttatgaggtcccatttg 833
Query: 166 ttgattcttgatatacaggacaggctattgctgttctatttaggaattttccggagaaag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ttgattcttgatatacaggacaggctattgctgttctatttaggaattttccggagaaag 773
Query: 226 tggggaaaacaaattcctttatgttcatgaaatatgttcatgagtattgtgcccctggcc 285
||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 772 tggggaaaacaaatt-ctt----tt------atatgttcatgagtattgtgcccctggcc 724
Query: 286 aggcatgggacacccacaaaactctggtattttctaaagaacccactgagtactatgaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aggcatgggacacccacaaaactctggtattttctaaagaacccactgagtactatgaag 664
Query: 346 caccatctaaagact-taagccaattagacctggtagatgatgttgcaagtcctgaaaaa 404
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caccatctaaaga-tgtaagccaattagacctggtagatgatgttgcaagtcctgaaaaa 605
Query: 405 tgaagactcaattagcagacatttttaaagttggaaacagcataagtccaattgaagaaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgaagactcaattagcagacatttttaaagttggaaacagcataagtccaattgaagaaa 545
Query: 465 tttagaaaaaaatggacagatatattccaagtattttagaaaaaggtaaacaatattgtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttagaaaaaaatggacagatatattccaagtattttagaaaaaggtaaacaatattgtt 485
Query: 525 gtgtgctaataggattctttcttgtgat 552
||||||||||||||||||||||||||||
Sbjct: 484 gtgtgctaataggattctttcttgtgat 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_a16.g1 MSMg01no046_a16.g1 CHROMAT_FILE:
MSMg01no046_a16.g1 PHD_FILE: MSMg01no046_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
(583 letters)
>mm_chr3_25461592_25462575
Length = 984
Score = 1009 bits (522), Expect = 0.0
Identities = 566/584 (96%), Gaps = 7/584 (1%)
Strand = Plus / Plus
Query: 1 tgttataggatccattaactcataattttatttaaaaacaaggaacagttttactttatt 60
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 207 tgttataggatccattagctcataattttatttaaaaacaaggaacag------tttatt 260
Query: 61 tagtttgcagtattttcagacatttacctaataaaatattttaaaataaatattcttaga 120
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtttgcagtaaattcagacattttcctaataaaatattttaaaataaatattcttaga 320
Query: 121 aacaccatctttgcaaagtctcctcgggaatttagttggcttaggaaaccaaatgtctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaccatctttgcaaagtctcctcgggaatttagttggcttaggaaaccaaatgtctga 380
Query: 181 ttaagacgtattagaaatcctaagaaacaataatgctaggtgtgggatgatcaaaatgat 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagatgtattagaaatcctaagaaacaataatgctaggtgtgggatgatcaaaatgat 440
Query: 241 agctattataataaaggcattagggaaatggttttaataatctcaaatgtttgggagaac 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 441 agctattataataaaggcattagggaaatggttctaataatctcaaatgtttggaagaac 500
Query: 301 attaaattgccttttctctatcagaagtagcttcagttatttctgcacaggaagctgact 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 attaaattgccttttctctatcagaagtagcttcaattatttctgcacaggaagctgact 560
Query: 361 ccttaggaagtggttctccgtccatgggaagtacagtgggtggg-catgacccttgctct 419
|||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ccttaggaagtgcttctccctccatgggaagtacagtgggtggggcatgacccttgctct 620
Query: 420 cattgatgcctttggacaagttgcttagcatgtgtgaagattggaggccacatgggtctt 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cattgatgcctttggacaagttgctttgcatgtgtgaagattggaggccacatgggtctt 680
Query: 480 cgagttgattcagccgctccctgtagctgccctgatcatgatgcatttcactgctttccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgagttgattcagccgctccctgtagctgccctgatcatgatgcatttcactgctttccc 740
Query: 540 atgagtcagtctcctcatcgtttctggaggattgccacagtcaa 583
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgagtcagtctcctcatcgtttctggaggattgccacagtcaa 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|