BAC Information

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BAC

Clone NameMSMg01-046A16
Chromosome3 (Build37)
Map Location 25,461,798 - 25,600,030
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046A16.T7 (MSMg01no046_a16.b1)MSMg01-046A16.TJ (MSMg01no046_a16.g1)
ACCAG276519AG276520
length680688
length of high quality
(start - end)
552 (33 - 584)583 (74 - 656)
definitionCHROMAT_FILE: MSMg01no046_a16.b1 PHD_FILE: MSMg01no046_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:08 2005CHROMAT_FILE: MSMg01no046_a16.g1 PHD_FILE: MSMg01no046_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,599,535 - 25,600,030)(25,461,798 - 25,462,375)
sequence
GCGGCCGCTATACGACTCCTATTCAGAGAGGATCCGCGGAATTCAGCTTC
TTCCGCTCTTTGTATATATTGAATATTAGTCCCCTATCAGATTTAGGATT
GGTAAAAATTCTTTCCCAATCTTTTGTTGGCCCTTTTGTCTTATTGACAG
TATCTTTTGCCCTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTG
ATTCTTGATATACAGGACAGGCTATTGCTGTTCTATTTAGGAATTTTCCG
GAGAAAGTGGGGAAAACAAATTCCTTTATGTTCATGAAATATGTTCATGA
GTATTGTGCCCCTGGCCAGGCATGGGACACCCACAAAACTCTGGTATTTT
CTAAAGAACCCACTGAGTACTATGAAGCACCATCTAAAGACTTAAGCCAA
TTAGACCTGGTAGATGATGTTGCAAGTCCTGAAAAATGAAGACTCAATTA
GCAGACATTTTTAAAGTTGGAAACAGCATAAGTCCAATTGAAGAAATTTA
GAAAAAAATGGACAGATATATTCCAAGTATTTTAGAAAAAGGTAAACAAT
ATTGTTGTGTGCTAATAGGATTCTTTCTTGTGATTTCATAGTAATAGGAG
GCTACTTGAAACACTTAACCTTTATATTTATCACCCAACTCCGTTTCAGA
TTATTCTGCTGATTTCATTTGATCTTCAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTATAGGATCCATTAACTCATAATT
TTATTTAAAAACAAGGAACAGTTTTACTTTATTTAGTTTGCAGTATTTTC
AGACATTTACCTAATAAAATATTTTAAAATAAATATTCTTAGAAACACCA
TCTTTGCAAAGTCTCCTCGGGAATTTAGTTGGCTTAGGAAACCAAATGTC
TGATTAAGACGTATTAGAAATCCTAAGAAACAATAATGCTAGGTGTGGGA
TGATCAAAATGATAGCTATTATAATAAAGGCATTAGGGAAATGGTTTTAA
TAATCTCAAATGTTTGGGAGAACATTAAATTGCCTTTTCTCTATCAGAAG
TAGCTTCAGTTATTTCTGCACAGGAAGCTGACTCCTTAGGAAGTGGTTCT
CCGTCCATGGGAAGTACAGTGGGTGGGCATGACCCTTGCTCTCATTGATG
CCTTTGGACAAGTTGCTTAGCATGTGTGAAGATTGGAGGCCACATGGGTC
TTCGAGTTGATTCAGCCGCTCCCTGTAGCTGCCCTGATCATGATGCATTT
CACTGCTTTCCCATGAGTCAGTCTCCTCATCGTTTCTGGAGGATTGCCAC
AGTCAACACCATCCAGCCTAATGCCATTTATTTAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_a16.b1 MSMg01no046_a16.b1 CHROMAT_FILE:
MSMg01no046_a16.b1 PHD_FILE: MSMg01no046_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
         (552 letters)



>mm_chr3_25599079_25600030
          Length = 952

 Score =  905 bits (468), Expect = 0.0
 Identities = 494/508 (97%), Gaps = 13/508 (2%)
 Strand = Plus / Minus

                                                                       
Query: 46  agtcccctatcagatttaggattggtaaaaattctttcccaatcttttgttggccctttt 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 agtcccctatcagatttaggattggtaaaaattctttcccaatcttttgttggccctttt 893

                                                                       
Query: 106 gtcttattgacagtatcttttgccctacagaagctttgcaattttatgaggtcccatttg 165
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gtcttattgacagaatcttttgccctacagaagctttgcaattttatgaggtcccatttg 833

                                                                       
Query: 166 ttgattcttgatatacaggacaggctattgctgttctatttaggaattttccggagaaag 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ttgattcttgatatacaggacaggctattgctgttctatttaggaattttccggagaaag 773

                                                                       
Query: 226 tggggaaaacaaattcctttatgttcatgaaatatgttcatgagtattgtgcccctggcc 285
           ||||||||||||||| |||    ||      |||||||||||||||||||||||||||||
Sbjct: 772 tggggaaaacaaatt-ctt----tt------atatgttcatgagtattgtgcccctggcc 724

                                                                       
Query: 286 aggcatgggacacccacaaaactctggtattttctaaagaacccactgagtactatgaag 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aggcatgggacacccacaaaactctggtattttctaaagaacccactgagtactatgaag 664

                                                                       
Query: 346 caccatctaaagact-taagccaattagacctggtagatgatgttgcaagtcctgaaaaa 404
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caccatctaaaga-tgtaagccaattagacctggtagatgatgttgcaagtcctgaaaaa 605

                                                                       
Query: 405 tgaagactcaattagcagacatttttaaagttggaaacagcataagtccaattgaagaaa 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgaagactcaattagcagacatttttaaagttggaaacagcataagtccaattgaagaaa 545

                                                                       
Query: 465 tttagaaaaaaatggacagatatattccaagtattttagaaaaaggtaaacaatattgtt 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttagaaaaaaatggacagatatattccaagtattttagaaaaaggtaaacaatattgtt 485

                                       
Query: 525 gtgtgctaataggattctttcttgtgat 552
           ||||||||||||||||||||||||||||
Sbjct: 484 gtgtgctaataggattctttcttgtgat 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no046_a16.g1 MSMg01no046_a16.g1 CHROMAT_FILE:
MSMg01no046_a16.g1 PHD_FILE: MSMg01no046_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:08 2005
         (583 letters)



>mm_chr3_25461592_25462575
          Length = 984

 Score = 1009 bits (522), Expect = 0.0
 Identities = 566/584 (96%), Gaps = 7/584 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttataggatccattaactcataattttatttaaaaacaaggaacagttttactttatt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||
Sbjct: 207 tgttataggatccattagctcataattttatttaaaaacaaggaacag------tttatt 260

                                                                       
Query: 61  tagtttgcagtattttcagacatttacctaataaaatattttaaaataaatattcttaga 120
           ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtttgcagtaaattcagacattttcctaataaaatattttaaaataaatattcttaga 320

                                                                       
Query: 121 aacaccatctttgcaaagtctcctcgggaatttagttggcttaggaaaccaaatgtctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaccatctttgcaaagtctcctcgggaatttagttggcttaggaaaccaaatgtctga 380

                                                                       
Query: 181 ttaagacgtattagaaatcctaagaaacaataatgctaggtgtgggatgatcaaaatgat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagatgtattagaaatcctaagaaacaataatgctaggtgtgggatgatcaaaatgat 440

                                                                       
Query: 241 agctattataataaaggcattagggaaatggttttaataatctcaaatgtttgggagaac 300
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 441 agctattataataaaggcattagggaaatggttctaataatctcaaatgtttggaagaac 500

                                                                       
Query: 301 attaaattgccttttctctatcagaagtagcttcagttatttctgcacaggaagctgact 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 attaaattgccttttctctatcagaagtagcttcaattatttctgcacaggaagctgact 560

                                                                       
Query: 361 ccttaggaagtggttctccgtccatgggaagtacagtgggtggg-catgacccttgctct 419
           |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ccttaggaagtgcttctccctccatgggaagtacagtgggtggggcatgacccttgctct 620

                                                                       
Query: 420 cattgatgcctttggacaagttgcttagcatgtgtgaagattggaggccacatgggtctt 479
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cattgatgcctttggacaagttgctttgcatgtgtgaagattggaggccacatgggtctt 680

                                                                       
Query: 480 cgagttgattcagccgctccctgtagctgccctgatcatgatgcatttcactgctttccc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgagttgattcagccgctccctgtagctgccctgatcatgatgcatttcactgctttccc 740

                                                       
Query: 540 atgagtcagtctcctcatcgtttctggaggattgccacagtcaa 583
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgagtcagtctcctcatcgtttctggaggattgccacagtcaa 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space:   558102
Effective search space used:   558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)