BAC Information

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BAC

Clone NameMSMg01-046F19
Chromosome3 (Build37)
Map Location 10,887,866 - 10,888,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564
Downstream geneLOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046F19.T7 (MSMg01no046_f19.b1)MSMg01-046F19.TJ (MSMg01no046_f19.g1)
ACCAG276757AG276758
length690702
length of high quality
(start - end)
568 (32 - 599)470 (72 - 541)
definitionCHROMAT_FILE: MSMg01no046_f19.b1 PHD_FILE: MSMg01no046_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:30 2005CHROMAT_FILE: MSMg01no046_f19.g1 PHD_FILE: MSMg01no046_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCCTATAGCGAGAGGTCCGCGGAATTATTAAATAC
TCTTAATGAAAAAGCAAGAATGTATGCTGTTTGTGTCCGGTCTTGTTATG
GTTTAAGAAGATAACCCTCCTAGGAGGCTTGCTTTACATGAGAAAGAGGA
GGTACTTCACATGAATAACATGTCCAGAATGTGAAGGGAGTCTTCTTAGT
CATGTCTCTTCCTTTCATTTATGACTAACATGCAGCATCATGGGTGTCTG
ATAGAATTCTGACCCTTGACCAGAGCCTCTAGGATTGCGAGAAGTGACTC
TGCCTACAGGAAGACTCACATTGGGTGTTTCTTGGTTCAACCCTATTAAA
CATTTGGAATTCTCTAGTTTTTTTTCCTTTTCAGAGTTATTAACTATTTT
TGTAATTGCTCTTTACAGAAACATACATTAGTTTTACACATCAGTCTCTC
TACTGCAATTTCTAGATATCCTTAAAGCTCACCCTTCTTTCTAACCAGAG
CACTGTGTCACTGCAACAGATTTGGGGTCAGAAGCTTGGTTTTTCCTGGA
ATGATATTTCTAGGTCACTTAATATATGGCATTTGTGTGTGTTGGGGTGT
GCTCAGGATCATTTATTTATCTTGGCTCATCTTTTTGAGCATGGCTGTCT
AGCCATACAGTGTGCTGGTATGGATGACGGTTCCCACCTC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCGCAACAAGGTCAGGGTGGTTTGTGGTC
TTTGTCAGAATTCAGTGTGGGGCGGGGGGCAGGAGAATTGCTAATCTTGT
TATGAGAACAGCTAATATTGTTTTGGTAGCTGCAGGCTTAATCATTTTTG
ATCGCTAAAACTATGTTTTTACACTTGTTTAGTTAGCCAGCTTCCTTATC
TGGCTCTGTACTTTGCCTGCTAGTTCAGTTTGGAAAGTCCTTTTTGAAGG
GGGGAGGTACTGGGTGTTCTTGAATTCATTTTGGGTATTACAATGGTTTG
GCAGGGTAGTCCAAATGACTCCCAAAACATACAGCCCTTGGTTGCCCCTC
ATGGGTTGAGGGTGGGCCCTATTGCTTCAGACTCCATACATTTAGGACAG
AGGACTTCAGTAGTTCAATCTCTATCTTACCTGAAAATCTAATTCCCGTG
GTCTACTGTCCATGATTCCAGGAAACACTGTGCAAGTTGCCAATAGGGGG
GAACAATTAAACACTACTACCCAGTGGCTATACCTATTTATTACCAAAAT
ATTTATAATTTTAAATTTCGCTTAGCGGTGTCATCATTACATTAACTACT
TGCATTATATATGTACACATACTCTCCCACCCTATTCTCACACATTCTGA
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_f19.b1 MSMg01no046_f19.b1 CHROMAT_FILE:
MSMg01no046_f19.b1 PHD_FILE: MSMg01no046_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:30 2005
         (568 letters)



>mm_chr3_10887661_10888630
          Length = 970

 Score = 1009 bits (522), Expect = 0.0
 Identities = 555/566 (98%), Gaps = 4/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaatt-attaaatactcttaatg-aaaaagcaagaatgtatgctgtttgtgtccggtctt 63
           ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattaaatacttttaatgcaaaaagcaagaatgtatgctgtttgtgtccggtctt 265

                                                                       
Query: 64  gttatggtttaagaagataaccctcctaggaggcttgctttacatgagaaagaggaggta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttatggtttaagaagataaccctcctaggaggcttgctttacatgagaaagaggaggta 325

                                                                       
Query: 124 cttcacatgaataacatgtccagaatgtgaagggagtcttcttagtcatgtctcttcctt 183
           ||||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 326 cttcacatgaaga-catgtccagaatgtgaagggagcctttttagtcatgtctcttcctt 384

                                                                       
Query: 184 tcatttatgactaacatgcagcatcatgggtgtctgatagaattctgacccttgaccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatttatgactaacatgcagcatcatgggtgtctgatagaattctgacccttgaccaga 444

                                                                       
Query: 244 gcctctaggattgcgagaagtgactctgcctacaggaagactcacattgggtgtttcttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctctaggattgcgagaagtgactctgcctacaggaagactcacattgggtgtttcttg 504

                                                                       
Query: 304 gttcaaccctattaaacatttggaattctctagtttttttt-ccttttcagagttattaa 362
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 gttcaaccctattaaacatttggaattctctagtttttttttccttttcagagttattaa 564

                                                                       
Query: 363 ctatttttgtaattgctctttacagaaacatacattagttttacacatcagtctctctac 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 ctatttttgtaattgctctttacagaaacatacattagttttacacaacagtctctctac 624

                                                                       
Query: 423 tgcaatttctagatatccttaaagctcacccttctttctaaccagagcactgtgtcactg 482
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 tgcaatttctagatatccttaaagctcacccttctttctaaccagaacactgtgtcactg 684

                                                                       
Query: 483 caacagatttggggtcagaagcttggtttttcctggaatgatatttctaggtcacttaat 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caacagatttggggtcagaagcttggtttttcctggaatgatatttctaggtcacttaat 744

                                     
Query: 543 atatggcatttgtgtgtgttggggtg 568
           | ||||||||||||||||||||||||
Sbjct: 745 agatggcatttgtgtgtgttggggtg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 970
Length adjustment: 10
Effective length of query: 558
Effective length of database: 960
Effective search space:   535680
Effective search space used:   535680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)