Query= MSMg01no046_k24.b1 MSMg01no046_k24.b1 CHROMAT_FILE:
MSMg01no046_k24.b1 PHD_FILE: MSMg01no046_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:54 2005
(601 letters)
>mm_chr3_86260015_86261016
Length = 1002
Score = 1027 bits (531), Expect = 0.0
Identities = 586/621 (94%), Gaps = 29/621 (4%)
Strand = Plus / Plus
Query: 10 tctttagacttacctttatggagcattttctgttgtcagtgatgaagagtc-cattcatt 68
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 210 tctttagacttacctttatggagcattttctgttgtcagtgatgaagagtcacattcatt 269
Query: 69 atagagcctgacatagtttctcatttgagtaacatagttttattagcaattaagagttct 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atagagcctgacatagtttctcatttgagtaacatagttttattagcaattaagagttct 329
Query: 129 aaaatgatgagcatgggagagttagtcctgcagcttgtctgccgtgctatgacatgggta 188
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 aaaatgatgagcatgggagagttagtcctgcagcttgtctgccatgctatgacatgggta 389
Query: 189 agggaaagagaaccctaccccatcttgccccttaccccctccctactgcaggcaggagag 248
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 agggaaagagaaccctaccccatcttgccccttaccccctccctacagcaggcaggagag 449
Query: 249 ctggctccgaggttatcagagcaggagatgcatcacttggagagcaggccttgcatctta 308
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 450 ctggctccgaggttatcagagcaggagatgcagcacttggagagcaggccttgcatctta 509
Query: 309 cctgggcagcatagtagagatggccctggatgccagctggctttgcttcttgtctgctat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cctgggcagcatagtagagatggccctggatgccagctggctttgcttcttgtctgctat 569
Query: 369 gctgtggaatggacaagagaaagagagagggagagagagagagagagagaga-------- 420
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gctgtggaatggacaagagaaagagagagggagagagagagagagagagagagagagaga 629
Query: 421 --------------aagagagag--agagagaga----cccttcctcaccacccttgtcc 460
||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 630 atgagagagagagaaagagagagggagagagagagaggcccttcctcaccacccttgtcc 689
Query: 461 cttgctacctatggcaggctggagagctcgtcccagagtcatgagagcaggagagatggc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttgctacctatggcaggctggagagctcgtcccagagtcatgagagcaggagagatggc 749
Query: 521 catgggccatgtctctcactgtctgccatacgtgagagtgctcctgcaccttacctcagc 580
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 750 catgggtcatgtctctcactgtctgcaatatgtgagagtgctcctgcaccttacctcagc 809
Query: 581 agcagagtagagctggccctg 601
|||||||||||||||||||||
Sbjct: 810 agcagagtagagctggccctg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_k24.g1 MSMg01no046_k24.g1 CHROMAT_FILE:
MSMg01no046_k24.g1 PHD_FILE: MSMg01no046_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:54 2005
(325 letters)
>mm_chr3_86380629_86381353
Length = 725
Score = 613 bits (317), Expect = e-180
Identities = 323/325 (99%)
Strand = Plus / Minus
Query: 1 agcagcaatgacatttctgaatttctctgacttaaaatattttttaaatttattccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agcagcaatgacatttctgaatttctctgacttaaaatattttttaaatttattccaaat 520
Query: 61 cagtttttctattttgaaagatgatgctaaagaatagcaatcctctttaaaaaccatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagtttttctattttgaaagatgatgctaaagaatagcaatcctctttaaaaaccatata 460
Query: 121 aaggagatggggtggtggggaagggggggattccagagtagtccgagccattagtcccac 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 459 aaggagatggggtggtggggaaggggggaattccagagtagtccgagccattagtcccac 400
Query: 181 tcacttcttctcttatgtgcccccattcaccacaaagtcttttttagggtcctggctcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcacttcttctcttatgtgcccccattcaccacaaagtcttttttagggtcctggctcac 340
Query: 241 tgccacaccttttatgataggtacagatttttaaaatgaaagttaatgtgttctagtatc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 339 tgccacaccttttatgataggtacagattttaaaaatgaaagttaatgtgttctagtatc 280
Query: 301 tagcactaattttttaaaaaattaa 325
|||||||||||||||||||||||||
Sbjct: 279 tagcactaattttttaaaaaattaa 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
