Query= MSMg01no046_m01.b1 MSMg01no046_m01.b1 CHROMAT_FILE:
MSMg01no046_m01.b1 PHD_FILE: MSMg01no046_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
(557 letters)
>mm_chr3_140359429_140360383
Length = 955
Score = 984 bits (509), Expect = 0.0
Identities = 537/547 (98%), Gaps = 2/547 (0%)
Strand = Plus / Minus
Query: 11 tcttttatactcattggactttatgctcatgttttagtcatgcattaataaacatttttt 70
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 755 tcttttattttcgttggactttatgctcatgttttagtcatgcattaataaaca--tttt 698
Query: 71 ttgagttgaattgaattcattctttttaatcctctaaatctctgtatctgatgttaagga 130
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 697 ttgagttgaattgaattcattctttttaatcctctaaatctctgtatctgatgtgaagga 638
Query: 131 ttaaccaataatgtatttatgtcacatcaaacgtgtgttcaaatgaagaaaagaaaattt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ttaaccaataatgtatttatgtcacatcaaacgtgtgttcaaatgaagaaaagaaaattt 578
Query: 191 gcaattagtcctttgccatattggctctatacaaagtatagcatagcactaagtgaaatt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gcaattagtcctttgccatattggctctatacaaagtatagcatagcactaagtgaaatt 518
Query: 251 gcatatgtattttaaacattttctagagatgaggtttttgaaaagcctaagttcatttat 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcatatgtattttaaacattttctagagatgaggtttttgaaaagcctaagttcatttat 458
Query: 311 ctaaattgaaggtaaaagagacatggaacttagtgacagacaaggaacttgacaccatca 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctaaattgaaggtaaaagagacatggaacttagtgacagacaaggaacttgacaccatca 398
Query: 371 tctatccattttcacaattaaatttggccatctaaccacagggttgatagtgggttgttg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctatccattttcacaattaaatttggccatctaaccacagggttgatagtgggttgttg 338
Query: 431 agggactgataagtacccctcccaggtatggcctcattgagcatgaccagaatatattat 490
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 337 agggactgataagtacccctcccagatatggcctcattgtgcatgaccagagtatattat 278
Query: 491 tcaagttgtgctattttagcataataattattttgagagcctaccataacataataaagt 550
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 277 tcaagttgtgctattttagcataataattattttgagagcctacaataacataataaagt 218
Query: 551 ctgagat 557
|||||||
Sbjct: 217 ctgagat 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_m01.g1 MSMg01no046_m01.g1 CHROMAT_FILE:
MSMg01no046_m01.g1 PHD_FILE: MSMg01no046_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
(454 letters)
>mm_chr3_140281872_140282726
Length = 855
Score = 810 bits (419), Expect = 0.0
Identities = 446/455 (98%), Gaps = 1/455 (0%)
Strand = Plus / Plus
Query: 1 tcataactccctccaccattgtcagaagtactgtgtacatcaatcactgttggctttatg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcataactccctccaccattgtcagaagtactgtgtacatcaatcgctgttggctttatg 260
Query: 61 agtttgtcaagagaagaagggtagaagaagtaggcaattctagtgatctgaaaactcatt 120
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 261 agtttgtcaagagaagaagggtagaagaagtacgcaattctagtgatctcaaaactcatt 320
Query: 121 tatttttctatatctttatttttcaacataggctatcactattacttctacaagatcttg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttctatatctttatgtttcaacataggctatcactattacttctacaagatcttg 380
Query: 181 ctgttccacattgcttttaaatttcacactaaatagaagaagcaagccattactcagtgt 240
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttccacaatgtttttaaatttcacactaaatagaagaagcaagccattactcagtgt 440
Query: 241 aaagaatactttaatttcttttgaccactggtttctcataaattaagatttttataacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaatactttaatttcttttgaccactggtttctcataaattaagatttttataacag 500
Query: 301 catgaatctgactatgacagaacaatttgtaattatgtgactttcaattgtatctcttga 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 catgaatctgactatgacagaacaatttataattatgtgactttcaattgtatctcttga 560
Query: 361 tttaagggttactctgggggcaccttttctttttt-caaaatattttctacaaaatgaac 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tttaagggttactctgggggcaccttttctttttttcaaaatattttctacaaaatgaac 620
Query: 420 agttggagtgtatccttgaagtgagtaaatagggt 454
||||| |||||||||||||||||||||||||||||
Sbjct: 621 agttgtagtgtatccttgaagtgagtaaatagggt 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space: 375180
Effective search space used: 375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
