CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGCCCGGACTATACAGAGAAACCCTGTCTCAGAAAAAGAAA
AAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA
AAAGAAAAAGAAAAAGAAAAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAA
GAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGA
AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAGAAAAGAAAAAGAAAAAGAA
AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA
AGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAATATATA
TACTCTTTCACCAACATGCTATGGTTCCCTTTGAAGAAAAGACTGTTGGC
AGAATTTTTCCATTAGAAAAATTATAAACTAAACGTGAAACAATTCTGGT
GCATGGTTGTCTATAGATAGTCTGGGGCCATTCATTTTGACAAATGCCTA
AGAAGTTCCTTAACTCATGGGTTCAATAATTAACTAAATGGGCTATAATT
CTAAGGCAATGCAATACATATTCTTAATATGTCTAAGCAGAAGAACTAAT
ATTTGTATAACAAGAACA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATG
AGTTATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCC
TGGACTGGACGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAATGGTCCT
GGTTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCC
CTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTG
ATTTTGTTACCCTCAATCAGCAGGCATGGGAGACAAGCTCTCTCCTCTGA
GTTTCAGTGGTCAGAGCTGTCTCTGCAGGCAAGCTCTCCTCTTTCGGGGA
AGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGG
CCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTG
GCCGGCCGTCTGGAGCCGAAGATGGCACCGCCTCAGAAGCTCTGTGGCTC
TTGCCAGGAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGCGCCGCCCCAG
AAGCTCTGCAACTCTTGCCTGTACCAGAATCGGCTGGCCTCTGTATTCCA
CATGGTCACCCGTGCAGCCTGCCCTCTGCGAAGTCCCGGAGCCTAGAAGG
T

Query= MSMg01no046_n18.b1 MSMg01no046_n18.b1 CHROMAT_FILE:
MSMg01no046_n18.b1 PHD_FILE: MSMg01no046_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:06 2005
         (665 letters)



>mm_chr3_113543690_113544751
          Length = 1062

 Score =  627 bits (324), Expect = 0.0
 Identities = 350/360 (97%), Gaps = 4/360 (1%)
 Strand = Plus / Minus

                                                                       
Query: 307 aaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaaga 366
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 959 aaaagaaaaagaaaaagaaaaagaaaaggaaaaagaaaaagaaaaagaaaaagaaaaaga 900

                                                                       
Query: 367 aaaagaaaaag-aaaaagaaaaagaaaaagaaaaaatatatatactctttcaccaacatg 425
           ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 899 aaaagaaaaggaaaaaagaaaaagaaaaagaaaaaaaatatatactctttcaccaacatg 840

                                                                       
Query: 426 ctatggttccctttgaagaaaagactgttggcagaatttttccattagaaaaattataaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 839 ctatggttccctttgaagaaaagactgttggcagaatttttccattag---aattataaa 783

                                                                       
Query: 486 ctaaacgtgaaacaattctggtgcatggttgtctatagatagtctggggccattcatttt 545
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 782 ctaaacgtgaaacaattctggtgcatcgttgtctatagatagtctggggccattcatttt 723

                                                                       
Query: 546 gacaaatgcctaagaagttccttaactcatgggttcaataattaactaaatgggctataa 605
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 722 gacaaatgcctaagaagttccttaactcatgggtacaataattaactaaatgggctataa 663

                                                                       
Query: 606 ttctaaggcaatgcaatacatattcttaatatgtctaagcagaagaactaatatttgtat 665
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 662 ttctaaggcaatgcaatacatattcttaatatgtctaagcagaaaaactaatatttgtat 603



 Score =  221 bits (114), Expect = 2e-61
 Identities = 134/144 (93%), Gaps = 7/144 (4%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattccaggacagcccggactatacagagaaaccctgtctcagaaaaagaaaaagaaaa 64
            |||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||
Sbjct: 1001 gaattccaggacagccaggactatacagagaaaccctgtctc---aaaagaaaaagaaaa 945

                                                                        
Query: 65   agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 124
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 944  agaaaaagaaaaggaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaggaaaa 885

                                    
Query: 125  agaaaagaaaaagaaaaagaaaaa 148
            |    |||||||||||||||||||
Sbjct: 884  a----agaaaaagaaaaagaaaaa 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 129
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 3
Length of query: 665
Length of database: 1062
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1052
Effective search space:   689060
Effective search space used:   689060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)