BAC Information

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BAC

Clone NameMSMg01-047D17
Chromosome3 (Build37)
Map Location 81,143,780 - 81,257,236
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D17.T7 (MSMg01no047_d17.b1)MSMg01-047D17.TJ (MSMg01no047_d17.g1)
ACCAG277391AG277392
length731739
length of high quality
(start - end)		681 (46 - 726)487 (77 - 563)
definitionCHROMAT_FILE: MSMg01no047_d17.b1 PHD_FILE: MSMg01no047_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:32 2005CHROMAT_FILE: MSMg01no047_d17.g1 PHD_FILE: MSMg01no047_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,256,560 - 81,257,236)(81,143,780 - 81,144,266)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAACACCATAGAATATTGACAATGGCATCTAGGCCTTTGAAGAT
TTCTAATACTCCCTCAAAATACATGCATCAATTGTTTAAGGATTAATATA
ATATAATATAATATGGTCCTAACTAAAATTATTGATTTGTATAATAAAGT
AAAGAGAAATCATTTCTAAATTTATTACTGGCCAAGGTAGATTATCAGGA
CCTTAATATTAGGGGAAAAAATTCAAAATAAGAAACTGATGCTTGAATGA
AGCATTTCCCTGCACAGCACAGACATCTTCAGACATGTAATCACACTTCT
GTGGGAGGTGCAGCCATCCTCAGCCATGCAATTATATGACAGAGCTTTCC
ATTCTCTTCAGTTGTTCTGGAGCCCCAAGTTAAAATCATTACACAGTGAA
AAAGTAGTTTAAACAATAATACAATATAATTTAAAACAACAGAAGTGTAA
CTTTCTTCAGTGTTGTAGCTGGCTTTCTAGTTGGATCTTGAATTAGCCTC
TGGAATCAGTTACTGAATAGAGGACTGGCTAGAGAGTACACATTTGCACT
CAACCTAAAAGTTCCTGCCTTTTTCAGCAAGTGAAACACCTGAATCCTCC
AGTCTTAAGGAAATTATAGTTCTAAGAGCCAATGCCACTCGGTTGTTTTC
TTACATTTGTTTACAATTTTATTGCTATTAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGGGGTGTAGAGCTAAATCAGT
CTCTTTATGAAAGGAACACAAGACAAAAGCAGCCTGAACAATGGGCCTTC
ATTGAGATGAAGTTGCACTTCAAGATTCTCTGTGGAGAATTGGAACTACG
CCTAGTCTGTGGCTTGGAATGTAGTATGCCTCTTTCTATACCACATACCT
ATGCACTAAAGTTGAATTTGTACATTAAATTCAGCAAGAGATTTCACGAG
TATCTGGAGAATATGAAGCAATAGCTATATGCTGTGATGAAAGGTAAGAG
TGTCTTTTATTTCTGTTCTTCTCTGTGTCTCTTTCACTGTCTTCATGTCT
ATCTGTCTTTGTCTTTGTCTCTGTGTTTTTCTCTCTTTCTCTCTCTCATA
TATCCTATCTCTGAGTTTTGTCTCAAACTACATGATTGTATTCACCCTAG
TTTTAACACAAAGTTACTGGTTGACTGTGGTTAGCTGAAAGCTTATAGAA
CAAATCTGCAGGTGTGGAAAGTGATAGAAGTATACTCTACATTAAATTAA
TAAAAAATACAGTTTATCTGGAAACTATACATTTTTCCCAGCTATTTTCT
TTAATAAAAAGGTTGACTATCGCGTTATTACTACTTAAAATTTGCTATTT
GAACTCTCTCCTTTTAATCTCCTCTCTTAATTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d17.b1 MSMg01no047_d17.b1 CHROMAT_FILE:
MSMg01no047_d17.b1 PHD_FILE: MSMg01no047_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:32 2005
         (681 letters)



>mm_chr3_81256241_81257321
          Length = 1081

 Score = 1278 bits (661), Expect = 0.0
 Identities = 673/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataacaccatagaatattgacaatggcatctaggcctttgaagatttctaatac 64
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 996 gaattcataacaccagagaatattgacaatggcatctaggtctttgaagatttctaatac 937

                                                                       
Query: 65  tccctcaaaatacatgcatcaattgtttaaggattaatataatataatataatatggtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tccctcaaaatacatgcatcaattgtttaaggattaatataatataatataatatggtcc 877

                                                                       
Query: 125 taactaaaattattgatttgtataataaagtaaagagaaatcatttctaaatttattact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 taactaaaattattgatttgtataataaagtaaagagaaatcatttctaaatttattact 817

                                                                       
Query: 185 ggccaaggtagattatcaggaccttaatattaggggaaaaaattcaaaataagaaactga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggccaaggtagattatcaggaccttaatattaggggaaaaaattcaaaataagaaactga 757

                                                                       
Query: 245 tgcttgaatgaagcatttccctgcacagcacagacatcttcagacatgtaatcacacttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgcttgaatgaagcatttccctgcacagcacagacatcttcagacatgtaatcacacttc 697

                                                                       
Query: 305 tgtgggaggtgcagccatcctcagccatgcaattatatgacagagctttccattctcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgtgggaggtgcagccatcctcagccatgcaattatatgacagagctttccattctcttc 637

                                                                       
Query: 365 agttgttctggagccccaagttaaaatcattacacagtgaaaaagtagtttaaacaataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agttgttctggagccccaagttaaaatcattacacagtgaaaaagtagtttaaacaataa 577

                                                                       
Query: 425 tacaatataatttaaaacaacagaagtgtaactttcttcagtgttgtagctggctttcta 484
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tacaatataatttcaaacaacagaagtgtaactttcttcagtgttgtagctggctttcta 517

                                                                       
Query: 485 gttggatcttgaattagcctctggaatcagttactgaatagaggactggctagagagtac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gttggatcttgaattagcctctggaatcagttactgaatagaggactggctagagagtac 457

                                                                       
Query: 545 acatttgcactcaacctaaaagttcctgcctttttcagcaagtgaaacacctgaatcctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acatttgcactcaacctaaaagttcctgcctttttcagcaagtgaaacacctgaatcctc 397

                                                                       
Query: 605 cagtcttaaggaaattatagttctaagagccaatgccactcggttgttttcttacatttg 664
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cagtcttaagaaaattatagttctaagagccaatgccactcggttgttttcttacatttg 337

                            
Query: 665 tttacaattttattgct 681
           |||||||||||||||||
Sbjct: 336 tttacaattttattgct 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_d17.g1 MSMg01no047_d17.g1 CHROMAT_FILE:
MSMg01no047_d17.g1 PHD_FILE: MSMg01no047_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:32 2005
         (487 letters)



>mm_chr3_81143580_81144466
          Length = 887

 Score =  934 bits (483), Expect = 0.0
 Identities = 486/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggggtgtagagctaaatcagtctctttatgaaaggaacacaagacaaaagcagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggggtgtagagctaaatcagtctctttatgaaaggaacacaagacaaaagcagcctg 260

                                                                       
Query: 61  aacaatgggccttcattgagatgaagttgcacttcaagattctctgtggagaattggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaatgggccttcattgagatgaagttgcacttcaagattctctgtggagaattggaac 320

                                                                       
Query: 121 tacgcctagtctgtggcttggaatgtagtatgcctctttctataccacatacctatgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacgcctagtctgtggcttggaatgtagtatgcctctttctataccacatacctatgcac 380

                                                                       
Query: 181 taaagttgaatttgtacattaaattcagcaagagatttcacgagtatctggagaatatga 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 taaagttgaatttgtacattaaattcagcaagagatttcgcgagtatctggagaatatga 440

                                                                       
Query: 241 agcaatagctatatgctgtgatgaaaggtaagagtgtcttttatttctgttcttctctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatagctatatgctgtgatgaaaggtaagagtgtcttttatttctgttcttctctgt 500

                                                                       
Query: 301 gtctctttcactgtcttcatgtctatctgtctttgtctttgtctctgtgtttttctctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctctttcactgtcttcatgtctatctgtctttgtctttgtctctgtgtttttctctct 560

                                                                       
Query: 361 ttctctctctcatatatcctatctctgagttttgtctcaaactacatgattgtattcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctctctctcatatatcctatctctgagttttgtctcaaactacatgattgtattcacc 620

                                                                       
Query: 421 ctagttttaacacaaagttactggttgactgtggttagctgaaagcttatagaacaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagttttaacacaaagttactggttgactgtggttagctgaaagcttatagaacaaatc 680

                  
Query: 481 tgcaggt 487
           |||||||
Sbjct: 681 tgcaggt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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