Query= MSMg01no047_j07.b1 MSMg01no047_j07.b1 CHROMAT_FILE:
MSMg01no047_j07.b1 PHD_FILE: MSMg01no047_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:57 2005
(593 letters)
>mm_chr3_29446258_29447249
Length = 992
Score = 1087 bits (562), Expect = 0.0
Identities = 583/590 (98%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtccctctgtttctgtctctctgcctccatgtccaccatgcttcctgttttg 63
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 594 ggaattctgtccctctgtttctgtctctctgcctccatgtccaccacgcttcctgttttg 535
Query: 64 gttttcaaactctctggaaacacatctatttcataggcgctcgataagaactgagccatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gttttcaaactctctggaaacacatctatttcataggcgctcgataagaactgagccatc 475
Query: 124 ctcaattttcttgtctctttcttcaagatatccttagaaggaatcatctccattattatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctcaattttcttgtctctttcttcaagatatccttagaaggaatcatctccattattatt 415
Query: 184 ttcagaactaaaataaaataaagcacacaagccaggtctcatttcaccatctcatgggcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttcagaactaaaataaaataaagcacacaagccaggtctcatttcaccatctcatgggcc 355
Query: 244 tgaagttagcccaggcatcactagacactcaaattcccctagtccatttcaatcctgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgaagttagcccaggcatcactagacactcaaattcccctagtccatttcaatcctgttt 295
Query: 304 gacctatattacatgtgctatattttatattaattacacagttgatactacactatgcaa 363
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 294 gacctatattacacgtgctatatttcatattaattacacagttgataccacactatgcaa 235
Query: 364 atatgtattctgatatttctgaattgtttatcataaatatttttatcattttataaatat 423
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 234 -tatgtattctgatatttccgaattgtttatcataaacatttttatcattttataaatat 176
Query: 424 atcttcaaaagtactaattaatatttgactgattttgtgcttacagtgaagctccttgcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atcttcaaaagtactaattaatatttgactgattttgtgcttacagtgaagctccttgcc 116
Query: 484 ttaaactcctcaaatacatatgaggagtagaggatcaatactctagtataagtctgctca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ttaaactcctcaaatacatatgaggagtagaggatcaatactctagtataagtctgctca 56
Query: 544 actgtaccacaaagaaataacattaaggaagaggataaaaatattataca 593
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 actgtaccacaaagaaataacattaaggaagaggataaaaatattataca 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_j07.g1 MSMg01no047_j07.g1 CHROMAT_FILE:
MSMg01no047_j07.g1 PHD_FILE: MSMg01no047_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:57 2005
(273 letters)
>mm_chr3_29334084_29334756
Length = 673
Score = 516 bits (267), Expect = e-151
Identities = 271/273 (99%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 1 ctaaacaaggatattcaaagtgtttcttttgatattttttgcttttttgattatttgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaacaaggatattcaaagtgtttcttttgatattttttgcttttttgattatttgatt 260
Query: 61 ttttcctatttacatgtatacacaggtgtgtatgtgtatctctgtatgtgtgtgtgtgtg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttttcctatttacatgtatacacaggtgtgtatgtgtatctctg--tgtgtgtgtgtgtg 318
Query: 121 tgtgtctatgtgtacttgtgcatgcatgtgtgtattgtgcatgagtgcttgtgcatgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtgtctatgtgtacttgtgcatgcatgtgtgtattgtgcatgagtgcttgtgcatgtat 378
Query: 181 gtgtgcatgtgtgtacaggggtgaatgttagtgtttgtgaatgtatatgcgtgcatgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgtgcatgtgtgtacaggggtgaatgttagtgtttgtgaatgtatatgcgtgcatgttc 438
Query: 241 ttgtgtgtgtgcacatgtgtgtataccaagaac 273
|||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtgtgtgtgcacatgtgtgtataccaagaac 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
