BAC Information

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BAC

Clone NameMSMg01-048E06
Chromosome3 (Build37)
Map Location 22,770,693 - 22,771,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
Downstream geneLOC623751, LOC100039548, EG635702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E06.T7 (MSMg01no048_e06.b1)MSMg01-048E06.TJ (MSMg01no048_e06.g1)
ACCAG278075AG278076
length1,2841,238
length of high quality
(start - end)
659 (120 - 778)733 (78 - 810)
definitionCHROMAT_FILE: MSMg01no048_e06.b1 PHD_FILE: MSMg01no048_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:01 2005CHROMAT_FILE: MSMg01no048_e06.g1 PHD_FILE: MSMg01no048_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTAACAGTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACAAAAACATACTAAACCTTATAACACTGCACATGAGCACAGAGGAC
CTGGTACAGACCGTTGCAGGCCCTGTGCATACTGCCTCAGTCTCTAGGAG
TTCATAATAGCTCTGCTCATGTGTATTTTAGGGCCTTGTTTTCTTGGTAT
CCTCCATTCCATCTGGCCTGTTGGTTTCCTGACCTGAGCATTCAAGCTGG
GGAGGTATAATAGGGACATCCCATTTAGGAATAAGTGTTTCAAGGTCTCT
CGCTCTCTATACTGACCAGCTCTGGGTCTCTATATTTGCCCCCATTTACT
ACATGTGGAACTTCTCTAATGATAGTTGAACAAGACAGTCATGTATGCAT
ATAACAGAATGTCACAAGGAGTCATTTATTAATACAGTGTTTTTCTGGTT
TTTCAGACCAACATTATTTCCCCCTTATAGCTAAGAATGTTGAGCATCTC
CTGAATTGTTTCTTTACCATTTGAGTTTCCTCTTTTGAGAATTTTCTGTT
TAGTTCCATACCACATTTTTAATCAGGCTTCTTGTTCTCTTGATATCAAG
TTTCTTGAATTCTTAATGTATTTTGAGCATTAGTCCTCTATTGGATATGT
GAAAGAAATAAATAAAGGGAAATATATGATAAATAAAAGTTTATACCTGA
ACTGGCTTTTGTCATAAGTAAAAATGTATGCCCATATTATATACATATAC
ATATATATGGATGCCTTTTATGGTGTACTCAAGAACATATATCTAAATGA
AGACACTGTGTTTAATATACACTCTTTAAATGAATCTTTTTATGTTGCAA
CATACCCTTTCATGTCAATGAAGTATTTCATTCCTTAATCATTCAAAAAC
TATTTTATTATTTTTAAAAAACTTAATTTTCTCTCCACCAATTAGGTAAA
TAAATTTTATAGTTATTAACACCCACCATTGTCCTCAAATAAAATCCTCA
CAAAACATTTCTATAAACTTAACTGGAATTTTCAAATGGCCCCATTCTTT
TTAAATAACTGAACTGGTTGATCTTTACAATCATTCTTTCCATTAAGAAA
TATTTTGTTAAACCCTTTTTGTTTTGACCCCCCTTGGTTTAACTTATTTT
TATTACAGCGTCCAAACTTTTTTTGTTTTTTTTGAAAAAAAAATCTCTTT
TGTTTCCTCCTCCACCCCTGGAAATTTATATATTTTAAAACATTATGGCC
CCACATTTATAATTTCACCGTGTGTGTCTTCCAT
TTTTTTAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTTGTTTATCTCTATACCCATTTTTAATA
GGGATATTGCCGTTTTCTGGAGTCCACCTTCTTGAGTTCTTTATTTATAT
TGGATATTAGTCCCCTATCAGATTTTGGAGTGGTAAAGATCTTTTCCCAA
TCTGTTGGTAGCCTTTTTTTTTTCTTATTGACAGTGTCCTTTACAGAAGC
TTTGCTATTTCTGAGGTCCGATTTGTTGATTCTTGATGTTACAGCGCAAG
CCATTGCTGTTCTGTTCAGGAATCTTTCCCCTGTGATCATATCTTCAAGG
CTCTTTCCCATTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
GAGATTCTTGATCCTCTTAGACGTGAGCTTTGTACAAAGAGATAAGAATG
GATCAATTTGCATTGTTCTACATGATAGCCACCAGTTCAGCCAGCACCAT
TTGTTGAAGATGCTTTTTTCCACTGGATGGTTTAACTCCTTTGTCAAAGA
TCAAGTGACCAGAAGTGTGTGGGTTCATTTCTGGGTCTTCAATTTTATTC
CATTAATTACCTGTCTGTCTCTGTACTAGTACCATGCAGTTTTTAATTAC
AATTGCTCTGTAGAGTTTGAGGTCAGGAATCGTGATTCCACCAGAGGTTC
CTTTATTATTGAAAATAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG
ATGAATCTGCAAATTACCTTTTCTAACTCAATGAAGATTTGAGTTGGAAT
TTTGATGGGGATTTCATTGAATCTGTATATTGCTTTTCGCAATATAGCCA
TTTTGACTATATTGATCCTGCCAATCCATGAGCATGTGAGATCTTTCCAT
CTTCTGAAATCTTCTTGGATTTCTCTCTCTCTCTCTTCTCTCTCTTCTTC
TCTTCTTTTAATTCCTTTTTTCTTTTTCCATTTTTTTATTTTTTACTTTT
TCTTTTTTTTTAAAGACTTGAATCTTTTCCCTTTTTTTTTTTTTTTTCTT
TTTTTCCATTTTCTTTGTTTTTATTCTTTCTTTCTTTTCTATAATGGTTT
CTTATTCTTTCTTTTTTGCTTTTTTTCTATTTTTTTTCTTTTTTTCAATT
ATGGATGTTTATTTCTCTTTTTTTCTGTTTCCCTCGCGGATTCTCTCTTT
ATTTATTTTTTCCTTTTATTTTTTTTTATTTTTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e06.b1 MSMg01no048_e06.b1 CHROMAT_FILE:
MSMg01no048_e06.b1 PHD_FILE: MSMg01no048_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:01 2005
         (659 letters)



>mm_chr3_22769991_22771049
          Length = 1059

 Score =  609 bits (315), Expect = e-178
 Identities = 344/357 (96%), Gaps = 6/357 (1%)
 Strand = Plus / Minus

                                                                        
Query: 309  attaatacagtgtttttctggtttttcagaccaacattatttcccccttatagctaagaa 368
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1059 attaatacagtgtttttctggttttttagaccaacattatttcccccttatagctaagaa 1000

                                                                        
Query: 369  tgttgagcatctcctgaattgtttctttaccatttgagtttcctcttttgagaattttct 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  tgttgagcatctcctgaattgtttctttaccatttgagtttcctcttttgagaattttct 940

                                                                        
Query: 429  gtttagttccataccacatttttaatcaggcttcttgttctcttgatatcaagtttcttg 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  gtttagttccataccacatttttaatcaggcttcttgttctcttgatatcaagtttcttg 880

                                                                        
Query: 489  aattcttaatgtattttgagcattagtcctctattggatatgtgaaagaaataaataaag 548
            ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 879  aattcttaatgtattttgagcattagtcctccattggatatgtgaaagaaagaaataaag 820

                                                                        
Query: 549  ggaaatatatgataaataaaagtttatacctgaactggcttttgtcataagtaaaaatgt 608
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 819  ggaaatatatgataaataaaagtttatacccgaactggcttttgtcataagtaaaaatgt 760

                                                                     
Query: 609  atgcccatattatatacatatacatata------tatggatgccttttatggtgtac 659
            |||  |||||||||||||||||||||||      ||||||||| |||||||||||||
Sbjct: 759  atgttcatattatatacatatacatatacatatatatggatgcattttatggtgtac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)