BAC Information

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BAC

Clone NameMSMg01-048G03
Chromosome3 (Build37)
Map Location 25,625,971 - 25,777,683
singlet/doubletdoublet
Overlap geneNlgn1, LOC621017
Upstream geneEG635702, LOC100039592
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048G03.T7 (MSMg01no048_g03.b1)MSMg01-048G03.TJ (MSMg01no048_g03.g1)
ACCAG278164AG278165
length1,1651,262
length of high quality
(start - end)		378 (37 - 414)755 (78 - 832)
definitionCHROMAT_FILE: MSMg01no048_g03.b1 PHD_FILE: MSMg01no048_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:15 2005CHROMAT_FILE: MSMg01no048_g03.g1 PHD_FILE: MSMg01no048_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(25,777,313 - 25,777,683)(25,625,971 - 25,626,725)
sequence
CTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCAGCTCTGAGCCCCTTTTTTTAATGGGATTATTTGATTTTCTGGAGTC
CACCCTCTTGATTTCTTTATATATATTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTCTGTCTTA
TTGACAGTGTCTTTTGCCATAGCCTTTCTAAAGTGTATTATACATGGAAA
ATATATTAATGGTATTATATCCAAATCATCATCAAATTTTCTTGGTCTAA
ATAAACTAAATTTAAAATACCTAATCTCAACATAATCTTGAATCCAAAAT
ATTTTTTAAAAAATTATTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCN
TNNNNNNNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTCTTTNTTCTTT
TCTTTTTTTTTTTTTTTTTTCTCTTCTTTCNTTTTCTTCTTCCTTTTTTT
TTTTTCTTCTTTTTCTTTTCTTCTTTTTTTTTTCTTTTTTTTTCTTTTTT
TTTTTTTTTTTCTTTCTCTTTTTTTTTTCTTCTTTTTTTTTCTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTCTCTCTTTTTTTTTCTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTT
CTTTTCCTCTTTTTTTTTTTTTTTTTTTCTTTCTCTTTTTTCTTTTTTTT
CTTTTTTTTTTTTTTTTTTTCTTCTCCTTTCTTTTTTTTTTTTTTCTTTT
CTTCTTTTTTTTCTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCTT
TTTTTTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTCTTCCTCTTTTTTT
TTTTCTTTCTTTTTTTCTTTTTCCTTTTCTTTTTTTCTCTCTTTTTCTTT
CTTTTTTTTTTTTCTNTTTTTTTTTCTCTTTTTTTTTCTTTTTTTTCTTT
CCTTTCTCTTTTTTCTCCCCTTCTTCTTTTTTTTCTCTCCTTTTTTTTTC
TCTTTTTTTTCTTTT

TTTTTAAGATGTGAGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTAAGAAGTCCTTGACATAACCAGGAATGA
GAAAGTCATCTCTTTGGACCATGTACACAGAAGGAAATGAATATAGGAGG
GGGCTTTTTGTCTTCTAGTTGGAAAAGGAAGAAAATATGAGAGAGAGGCA
CTGGGCATGAAATCAACTAAAATCCATTATATAAACCTATGAAAAGTGCC
AGTAAATTAATTTAAAAACCCAATTCAAATAAATATATGCTTAAAATATT
TTTAAAAAGCAATTAGAATGCAGACTCAAAAGACCAAGTGTTCTATATTC
TAATACCAACACCACTTTTAAAAGTAAAATTAATATATTTTATGAAGATA
AAATATCTATGAATATTCATAACTACCAATGCACATTTCACCAAAACATC
TGTGAGTTGTTTACGAATTCCGCCTCTAAACTATGACATTATCTCAAAAA
TGCACACATTGCTTGATCTGCTATTTACAAAGTGGAATGACAAATTGCCA
ATAGAGTAACTACATTTTAGGATACTAGCACTATCACACAATACTTAAAA
GAGACTATGAGCTCATGAACATAAAACATTGAGGAAACAAAACCAAGTTA
AAATTGAGGAAGTCATAAAAAATATGCCTACCTATTTCTAATAATCTTAT
ACTGGCTACAGTGTGAGGATGTTTGGGTTCAATAAAATGTATTCTTTTTG
TAATGATTCTGTTGATATTGTCTTGTTTTAACTGACACTACCCAAATAAT
ATACAGTAATACAATAGTCAAGAAAGCTCCAGAAAGGTAAATAAAGAGTC
TATGGAAAGTGTGGCTTGGCAGCTTTATCAATTGAATGTATCCTTCTGCT
TTCTAGGAGTGCATCCGCATAAGCATCTTACAGGGCCCCCAATGGAGGAG
CTAGAGAAAGTCCCCCAGGAACTTAAGGGNACTGCAACCCTATAGGTACC
ACAACAATATTGACTAACCAGGACCCCTGGACCTTCTGAATCTAGCTGCT
TACGTATCAAAAGATGGCCCTAGTCCGCCCTCTCTGGGAAAGAGAGGCCT
TTTGGACTTGCCAACTTTATATGCCCCCACAACGGGGTAAATGGAAGGCC
CAAAATTTGGAATAGGGGGTGTAGTGGAAATAGGGTTCTCTTCCTCTCTC
ATTTCTCTCTCTCTTCCTCTTTTATTCCATATCATATTTATTTACTTCTG
TTTTCAACTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_g03.b1 MSMg01no048_g03.b1 CHROMAT_FILE:
MSMg01no048_g03.b1 PHD_FILE: MSMg01no048_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:15 2005
         (378 letters)



>mm_chr3_25776997_25777774
          Length = 778

 Score =  679 bits (351), Expect = 0.0
 Identities = 366/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttcagctctgagcccctttttttaatgggattatttgattttctggagtc 64
           |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||
Sbjct: 687 gaattctttgttcagctctgaggcccattttttaatggggttatttgattttctggagtc 628

                                                                       
Query: 65  caccctcttgatttctttatatatattggatattagtcccctatctgatttaggataggt 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 caccttcttgatttctttatatatattggatattagtcccctatctgatttaggataggt 568

                                                                       
Query: 125 aaagatcctttcccaatctgttggtggtctttctgtcttattgacagtgtcttttgccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaagatcctttcccaatctgttggtggtctttctgtcttattgacagtgtcttttgccat 508

                                                                       
Query: 185 agcctttctaaagtgtattatacatggaaaatatattaatggtattatatccaaatcatc 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 507 agcctttctaaagtgtattatacatggaaaatatattattggtattatatccaaatcatc 448

                                                                       
Query: 245 atcaaattttcttggtctaaataaactaaatttaaaatacctaatctcaacataatcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcaaattttcttggtctaaataaactaaatttaaaatacctaatctcaacataatcttg 388

                                                                       
Query: 305 aatccaaaatattttttaaaaaattatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatccaaaatattttttaaaaaattatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 328

                      
Query: 365 tgtgtgtgtgt 375
           |||||||||||
Sbjct: 327 tgtgtgtgtgt 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no048_g03.g1 MSMg01no048_g03.g1 CHROMAT_FILE:
MSMg01no048_g03.g1 PHD_FILE: MSMg01no048_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:15 2005
         (755 letters)



>mm_chr3_25625771_25626925
          Length = 1155

 Score = 1444 bits (747), Expect = 0.0
 Identities = 753/755 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtccttgacataaccaggaatgagaaagtcatctctttggaccatgtacacagaaggaaa 60
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 201 gtccttgacataaccaggaatgagaaagtcatctcattgggccatgtacacagaaggaaa 260

                                                                       
Query: 61  tgaatataggagggggctttttgtcttctagttggaaaaggaagaaaatatgagagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatataggagggggctttttgtcttctagttggaaaaggaagaaaatatgagagagag 320

                                                                       
Query: 121 gcactgggcatgaaatcaactaaaatccattatataaacctatgaaaagtgccagtaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactgggcatgaaatcaactaaaatccattatataaacctatgaaaagtgccagtaaat 380

                                                                       
Query: 181 taatttaaaaacccaattcaaataaatatatgcttaaaatatttttaaaaagcaattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttaaaaacccaattcaaataaatatatgcttaaaatatttttaaaaagcaattaga 440

                                                                       
Query: 241 atgcagactcaaaagaccaagtgttctatattctaataccaacaccacttttaaaagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcagactcaaaagaccaagtgttctatattctaataccaacaccacttttaaaagtaa 500

                                                                       
Query: 301 aattaatatattttatgaagataaaatatctatgaatattcataactaccaatgcacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaatatattttatgaagataaaatatctatgaatattcataactaccaatgcacatt 560

                                                                       
Query: 361 tcaccaaaacatctgtgagttgtttacgaattccgcctctaaactatgacattatctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaccaaaacatctgtgagttgtttacgaattccgcctctaaactatgacattatctcaa 620

                                                                       
Query: 421 aaatgcacacattgcttgatctgctatttacaaagtggaatgacaaattgccaatagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatgcacacattgcttgatctgctatttacaaagtggaatgacaaattgccaatagagt 680

                                                                       
Query: 481 aactacattttaggatactagcactatcacacaatacttaaaagagactatgagctcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactacattttaggatactagcactatcacacaatacttaaaagagactatgagctcatg 740

                                                                       
Query: 541 aacataaaacattgaggaaacaaaaccaagttaaaattgaggaagtcataaaaaatatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacataaaacattgaggaaacaaaaccaagttaaaattgaggaagtcataaaaaatatgc 800

                                                                       
Query: 601 ctacctatttctaataatcttatactggctacagtgtgaggatgtttgggttcaataaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctacctatttctaataatcttatactggctacagtgtgaggatgtttgggttcaataaaa 860

                                                                       
Query: 661 tgtattctttttgtaatgattctgttgatattgtcttgttttaactgacactacccaaat 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgtattctttttgtaatgattctgttgatattgtcttgttttaactgacactacccaaat 920

                                              
Query: 721 aatatacagtaatacaatagtcaagaaagctccag 755
           |||||||||||||||||||||||||||||||||||
Sbjct: 921 aatatacagtaatacaatagtcaagaaagctccag 955


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1155
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1145
Effective search space:   853025
Effective search space used:   853025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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