Query= MSMg01no048_n18.b1 MSMg01no048_n18.b1 CHROMAT_FILE:
MSMg01no048_n18.b1 PHD_FILE: MSMg01no048_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:15 2005
(719 letters)
>mm_chr3_29580037_29581156
Length = 1120
Score = 1292 bits (668), Expect = 0.0
Identities = 707/720 (98%), Gaps = 1/720 (0%)
Strand = Plus / Plus
Query: 1 tccttctatagatgtgggaaatttacaatattatactacacatgaattaacaatccagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttctatagatgtgggaaatttacaatattatactacacatgaattaacaatccagga 260
Query: 61 ctcaacaattgttcactccccaatatctttctcttttcttacttttactccctttccccc 120
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 261 ctcaacaattgttcactccccaatatctttctcttttcttacttctgctccctttttccc 320
Query: 121 t-ttactatagaagcctagggcttgaaattgagaaaaaaacaatagataaacccagtagg 179
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tcttactatagaagcctagggcttgaaattgagaaaaaaacaatagataaatccagtagg 380
Query: 180 tagaaagcttagttagcattcacaaggctgtgacttcaagtactaacattacacaaacca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tagaaagcttagttagcattcacaaggctgtgacttcaagtactaacattacacaaaaca 440
Query: 240 agcagaatagagctataatctcagcatttaagaggtagaggaatgaggattagaatttta 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 agcagaatagagctataatctcagcatttaagaggtagaggaatgaggattagaatgtta 500
Query: 300 aagtcattatgagttctaggtcaatgttaagtacattaaaacttctctcaatgaacaaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcattatgagttctaggtcaatgttaagtacattaaaacttctctcaatgaacaaaa 560
Query: 360 caaggaagaaagagagaggggaaagaaagaaatgaatggtaataaagacattaggaaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaggaagaaagagagaggggaaagaaagaaatgaatggtaataaagacattaggaaaat 620
Query: 420 agaagatgaatatgtagctaactacagtagacttcatgtaggggcttgaataaaaatggc 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 agaagatgaatatgtagctaactacagtagacatcatgtaggggcttgaataaaaatggc 680
Query: 480 acccatagatccttagggcatggaactattaggaagtgtggccttgttggagtatgtttt 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccgtagatccttagggcatggaactattaggaagtgtggccttgttggagtatgtttt 740
Query: 540 gctttattagaggaagtacatcattagagggtgggctttgagttctcaaaaactcaagtc 599
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctttattggagaaagtacatcattagagggtgggctttgagttctcaaaaactcaagtc 800
Query: 600 tgcctagttcatttctcctgcatgtggatcaagatgtagaactctcagctccctctccag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcctagttcatttctcctgcatgtggatcaagatgtagaactctcagctccctctccag 860
Query: 660 aaccatgtctgcctgcatgctgccataagtcatgatgataatggactaagcctctaaagc 719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaccatgtctgcctgcatgcggccataagtcatgatgataatggactaagcctctaaagc 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1120
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1110
Effective search space: 786990
Effective search space used: 786990
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_n18.g1 MSMg01no048_n18.g1 CHROMAT_FILE:
MSMg01no048_n18.g1 PHD_FILE: MSMg01no048_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:15 2005
(732 letters)
>mm_chr3_29615115_29616245
Length = 1131
Score = 1369 bits (708), Expect = 0.0
Identities = 726/732 (99%), Gaps = 1/732 (0%)
Strand = Plus / Minus
Query: 1 tgtgtctgctccagagcattagtgttaaaagcatggattcctgccatacctaacttttaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 931 tgtgtctgctccagagcattagtgttaaaagcatggatttctgccatacctaacttttaa 872
Query: 61 tgagtattaaggatttgaacttaggacctcatgtctgcatagcaaatgttttcctgagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tgagtattaaggatttgaacttaggacctcatgtctgcatagcaaatgttttcctgagtg 812
Query: 121 aggaagctcctcagactcacaatctagttcttgatagtgctctctgattggttgtgaaga 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 811 aggaagctcctcagactcacaatctagttcttgatactgctctctgattggttgtgaaga 752
Query: 181 gtgtctttaaaatttagtttcctttgagttatgatatcttttctatttactgatagacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtgtctttaaaatttagtttcctttgagttatgatatcttttctatttactgatagacca 692
Query: 241 ccctatgacttggcaaaacttatgcatcaagtgtaattagccgttgaacctcttaaattt 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 691 ccctatgactt-gcaaaacttatgcatcaagtgtaattagctgttgaacctcttaaattt 633
Query: 301 cttagtcattactaagagtggaagttttatacctttctttccaataagccttgttggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cttagtcattactaagagtggaagttttatacctttctttccaataagccttgttggctg 573
Query: 361 atttactggactgcagggaccttcaggacagtgtagggatgagtgaaactagcagaatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atttactggactgcagggaccttcaggacagtgtagggatgagtgaaactagcagaatcc 513
Query: 421 ttgtcctgttctcctgatctcattttaatacacaagatgctatctgccctacgtgggcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgtcctgttctcctgatctcattttaatacacaagatgctatctgccctacgtgggcct 453
Query: 481 gtagattagttgtacaaaccatattattcccccctgtaacaactttgtaaaagtgcatct 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtagattagttgtaaaaaccatattattcccccctgtaacaactttgtaaaagtgcatct 393
Query: 541 tacatttttagaggttcataaataaatatcagtttaagttctgttcttagattgcaaaag 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 392 tacatttttagaggttcataaataaatatcagtttaagttctgctcttagattgcaaaag 333
Query: 601 gagtataagtgtttaaaaatgtatggtgttgttgaatattggattttatcatgtttttac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gagtataagtgtttaaaaatgtatggtgttgttgaatattggattttatcatgtttttac 273
Query: 661 gaatctgttaatgtgattatataattttgtcctattttctctagtaacatggtgcactac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaatctgttaatgtgattatataattttgtcctattttctctagtaacatggtgcactac 213
Query: 721 actgataggttt 732
||||||||||||
Sbjct: 212 actgataggttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1131
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1121
Effective search space: 809362
Effective search space used: 809362
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
