BAC Information

Click to search

BAC

Clone NameMSMg01-049F21
Chromosome3 (Build37)
Map Location 82,325,070 - 82,367,881
singlet/doubletdoublet
Overlap geneNpy2r
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
Downstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F21.T7 (MSMg01no049_f21.b1)MSMg01-049F21.TJ (MSMg01no049_f21.g1)
ACCAG278847AG278848
length1,2531,322
length of high quality
(start - end)		526 (86 - 611)135 (80 - 214)
definitionCHROMAT_FILE: MSMg01no049_f21.b1 PHD_FILE: MSMg01no049_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:18 2005CHROMAT_FILE: MSMg01no049_f21.g1 PHD_FILE: MSMg01no049_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,367,356 - 82,367,881)(82,325,070 - 82,325,200)
sequence
CTATTTTNNNNNNNACCATTGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAAACATTTTAATGTACTGTTCATGTACCATGATGGAGT
TTTCAAAATTAGCACATTCTAAATATTATAGAGCCCAGCATTATAGTTTG
AATCTGAAAAGTCCCCAGCAGAGAATAGTGTTTAGAACATGAAGTTCCAG
GCTTTGGGATTGTTTTGGGATTGTGCGGCTTTTAAGGAGATGCTTGGCTG
ATAAAAAAAGATCACTGGGGTGAGCATCCAAGGATGAAGAGCTTGGTGTC
TGATTTCATCTTTCTCTTTTTTCTGGACTCCATTATGTTAAGATTCTTCC
TATATGTATTCCTACTGTCCCAGACTGAGCCATTGTCCCATGTCTTTCTG
ACTGTCAATATAAGAATACTTGTTTGTTTTGAGAGCAACAAAACCATTCT
GTCTTTGTGTTGTATTTGGTCTGAGTTGCTAGGGTCACTCAATGGCCACC
AGTTACCCTAAGTCACTTTGTTTTGTGAATTTGAAGAATGAAATTCAATG
ATCATAGAGGGCATGTTTTAGAAAGAAGTATCTTATTCTGGAGAGAAAGA
GGGAGAGGGAGTGNNCTTTCTTTTTTTTTTCTCTTTTCTGTCTTTTTTTT
TTTCTTCTTTTTTTTTTTTTCTTTTTTCCTCTTTTTTCTTTTTTTTTTTT
TCCTCTTTTTTTTTTTTCTCCTTTTTTTTCTTTCCCTTTTTTCTTCTTTC
TTCTTTCTCTTTCTTTTCTTTTTTCTTCTCTTTCTCCTTTTCTTCTTCTT
TTCTTCTCTTTTTTTTTTTTTTTTCCTCCCTTCTTTTTTTTTTCTTCTTT
CTTTTTTCTCTTTTCTTTTTTCTTTCCCCTTTTTTTCTTGTATTTTTTTT
CTTCTTCCTTTCTTTTTTCTTTCTCCTTTTTTATATTTATTCTATTATTT
CTATATTTCTCCTTATCTTTTTATCCTTCTCTTTTTCTTTTTTCTATATT
TTTCTCTTATTTTCATCCTTTTTTCTTTTTCTCCCTATTTTATATTCTTT
TATCCTTTTTTNTCTTTTTATTTTTTTCTTTTATGTCTATTATTATTATC
TTATTCCTTTTATTTTTATTTTTTTATTTCTTTTTTTTTTCTCTCTTTCT
CTTTCTTTTTTCTTTCTATTCTCTTTTTTAGTTTATATTTTTTTATTCGT
CTCTATTTTTTCCTCTTATGTACTTTATCTCATTCTCCTATCTATTCTTT
TCT

TTTTTTCGCTAGGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTTTAACAGCCAGGGCTACACAGAGAACA
TCTATATCAGACAAACAAAGAAAGAGTGCAGAGGAGCAGGGGGTGGGGGT
GGCGCTCTTTCTATATTCATTTAAAAACATAATCAGCAACTATTTGAAAG
CTAACTTGTATCGGCAGAAAGGACTATAATGGAGTCAATACTTTGTATTG
AGAACCAAAGAAATTCTAACATAAAGAAAAATATTTGTATTATAATACTC
TAGTACACTATTTAATTTTAAAAGTTGAGTTTAATAACCAGCAGACATAA
ATTCATACTTTTTAATACCTGTGGTACATTGACACAATGCAGTACTACTC
AGCTATTTTTAACAACGAATTTATGAAATTCCTAGCGCCATAGATGGACC
TGCCACCCATCATTCTCAGTGACGTACCCCCTCTTATATGCATCTTCTAT
CTCATTGTATTTACTGCTTTCTTCATCTCTATCCATATTCTTACTCTTCC
TATTATTTTTTACACCTCTTGCTCTTCTCTTGTTTCTCTCTAATCTTGAC
GTTTCTCTCTGCGTCTCTCTCTCTTTTAACTTCTTATTTTTTTTCTCTTC
CTTCTTTCTTATTCTTTCCTTTTTCTATTCTTTTCTTCTTTTTGTTCTTT
TTTCTCTCTCTTCTCATTCTTTTTCCTCTTTTTCTCCTCTCTCTTTTTTA
TCTTCTCTCACTCTTATTTTTCTTCTTATATCTCCTACTCTTTTATTCTT
TCCCTTCCTCTTTCTCTTTTTTTTTCTCCTTCCTACTTCTCTTTCTTTTT
TTTCTTTTTTTTATTCTTTCTTTTTCCTTTCCTTTTCTTTCTTTCTCTTT
TCTTTACATTTTTCTTCTTCTTTTTCTTTTTCTTTTTTTATTTCTTCATC
TATCCCTTTTTCTCTTTATTTTTTTTTTTTTCTTTTCTTACTCTCTTTTC
TCCCTTTTCTTTCTCTTTTTTCCTTTTCTTTATTCTTTTCTCTCTCTCTT
TTTTTTTTCTCTCTTTTTTTCTATTTCTTTTTATCTTTTCTCCTTTTTCT
CTATTTTTTCCTTTCTCTCTTCTTTCTTACTCTCTTCTCTCTTTCTCTTA
ATCCTATCCTCTATTCCTACTCTTTCTTTTTCTTTTTATTCTTTGCTATT
TACTTTCTCTTTTTCTCTAACTCTTCTCCCTTCTCTATTTATATATTCCT
CTTCTCATTCCTCTACTCTTTCTCTTCTCTTTCCATATTCATTCTTATAT
CCTCTATTCTATTCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f21.b1 MSMg01no049_f21.b1 CHROMAT_FILE:
MSMg01no049_f21.b1 PHD_FILE: MSMg01no049_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:18 2005
         (526 letters)



>mm_chr3_82366971_82367896
          Length = 926

 Score = 1009 bits (522), Expect = 0.0
 Identities = 525/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaccatgatggagttttcaaaattagcacattctaaatattatagagcccagcattata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 911 gtaccatgatggagttttcaaaattagcacattctaaatattatagagccaagcattata 852

                                                                       
Query: 61  gtttgaatctgaaaagtccccagcagagaatagtgtttagaacatgaagttccaggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gtttgaatctgaaaagtccccagcagagaatagtgtttagaacatgaagttccaggcttt 792

                                                                       
Query: 121 gggattgttttgggattgtgcggcttttaaggagatgcttggctgataaaaaaagatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gggattgttttgggattgtgcggcttttaaggagatgcttggctgataaaaaaagatcac 732

                                                                       
Query: 181 tggggtgagcatccaaggatgaagagcttggtgtctgatttcatctttctcttttttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tggggtgagcatccaaggatgaagagcttggtgtctgatttcatctttctcttttttctg 672

                                                                       
Query: 241 gactccattatgttaagattcttcctatatgtattcctactgtcccagactgagccattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gactccattatgttaagattcttcctatatgtattcctactgtcccagactgagccattg 612

                                                                       
Query: 301 tcccatgtctttctgactgtcaatataagaatacttgtttgttttgagagcaacaaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcccatgtctttctgactgtcaatataagaatacttgtttgttttgagagcaacaaaacc 552

                                                                       
Query: 361 attctgtctttgtgttgtatttggtctgagttgctagggtcactcaatggccaccagtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 attctgtctttgtgttgtatttggtctgagttgctagggtcactcaatggccaccagtta 492

                                                                       
Query: 421 ccctaagtcactttgttttgtgaatttgaagaatgaaattcaatgatcatagagggcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccctaagtcactttgttttgtgaatttgaagaatgaaattcaatgatcatagagggcatg 432

                                                         
Query: 481 ttttagaaagaagtatcttattctggagagaaagagggagagggag 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttttagaaagaagtatcttattctggagagaaagagggagagggag 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no049_f21.g1 MSMg01no049_f21.g1 CHROMAT_FILE:
MSMg01no049_f21.g1 PHD_FILE: MSMg01no049_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:18 2005
         (135 letters)



>mm_chr3_82324870_82325404
          Length = 535

 Score =  215 bits (111), Expect = 1e-60
 Identities = 126/131 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccagggctacacagagaacatctatatcagacaaacaaagaaagagtgcagaggagcag 60
           |||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||
Sbjct: 201 gccagggctacacagagaacatctatctcggaaaaacaaagaaagagtggagaggagcag 260

                                                                       
Query: 61  ggggtgggggtggcgctctttctatattcatttaaaaacataatcagcaactatttgaaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtgggggtggggctctttctatattcatttaaaaacataatcagcaactatttgaaa 320

                      
Query: 121 gctaacttgta 131
           |||||||||||
Sbjct: 321 gctaacttgta 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 535
Length adjustment: 8
Effective length of query: 127
Effective length of database: 527
Effective search space:    66929
Effective search space used:    66929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |