BAC Information

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BAC

Clone NameMSMg01-049G02
Chromosome3 (Build37)
Map Location 60,591,441 - 60,618,149
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049G02.T7 (MSMg01no049_g02.b1)MSMg01-049G02.TJ (MSMg01no049_g02.g1)
ACCAG278856AG278857
length1,2121,238
length of high quality
(start - end)		710 (127 - 836)715 (77 - 791)
definitionCHROMAT_FILE: MSMg01no049_g02.b1 PHD_FILE: MSMg01no049_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:20 2005CHROMAT_FILE: MSMg01no049_g02.g1 PHD_FILE: MSMg01no049_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,617,776 - 60,618,149)(60,591,441 - 60,592,154)
sequence
CCTATTTATTNNNNNATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTAAGAATGTTGCCTACCCTATAGAATTCAGAATTGC
CTCTGGTATTACACTATCACTCCTAATAAACGCTAAGTCACTGCCCTACA
CAGGAATTTACCATCATCTAGGGAGAAGGAAGTTTGAGACCTAAAGAGGA
ACCAGAATAGATACTTAGAATTATAGATAGCTGAGTTATACCCATACACA
CGTATTTACAATGGCCTAAGGGAAAGGTGGACTATACAATAGACTAAAAT
AGGAACTATGGCAAGGTCAAGAAGCCCTTGACCCTGGATTCTAAGATTAA
GTGAATCTTAGGTGGAGCTCTTGTTGATCCCATTTGTTAACAATGAATTC
TATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTTGTATTCCTCTGTTTT
GTGAAAGAATCCAGTAACCTCTTTGTACCTTGCTGGTGTGTCACCCAACT
TCCTTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTGACAAATTAC
ATTCAGATTCTACACAACCTCTCCTGTGTGCATCTGTCTGTCATTCCATC
TGACACTTTGCCCACCTGCCCCAGAGACCCATTCCACGCAGACAAAGGGA
TCCAGAGGGTCTAGAAATTAGAAATTAGAGCAACATGTAAATTTTAAAAA
ATGATATCAATCTCAGCTCATTCATTTTGCAATTTGTCAAAGACTCATAT
TCCATTAAGATATATAACTGTATATTTTAATGTTATACCGAAGCTGATAT
ATGAGATACAACCGCCTTTCCTAGTTCTCTTTCATAAAAATGGAAGTCAA
GCAAGAAGCTCACAGAGCTTTCAGACCCAAGCTTTAAAGATGTGATCCCA
AACTTATGTTCTACTCTTCCAGCTGAAACTACACAGCAGCTGAAAGCAGG
GACAATTGCATGCACCGAACAGTGGTGTGGCAGCCCAAATGGTTGCCTTG
ACTTTTGAACCCCTGCCCAGAAGGACCCTTTGGTTGTACAAAAAAAAGCA
GGGGCCTTAAGTTCCAAAGAAGTACAACCAAAGTTAAAAGGTTTGGGGTA
AAGGAAAAGGATAGGTGCGAGGGGAGGTAATATCTCCTTTCCTCTTTTAT
ATTCTTATTATTTTCTACCTATTCTTTTTACTTATTACATTCTTCTTTCT
CCACTCTCTATT

NCCATTTTTTNNNNNATCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGATCCAACAGAGAACTATT
ACAGCCAGACTCACTTCACGATTCATTGGTCTAGATGCCAATTAAGAACA
AAAGCACACAGTCAGAGATAGTTTTCGACCACATCAAAGGTTTGCAAAAA
CTATGCATCATGACCCCATTAGAGGTCTCAGAGCCTCTCACAGGAGTTGA
CTAAGACCTAGAAAAACACAGATATTTAGATTATGATTCATAATGGTAAC
AAAATTACAATTATTAGTTAGCAACAAAAATAATTTTATGGTTGTGGTTC
ATCGGGACATGAGGAACTAACTGTATTAAAGGTTTGAAGCATTAGAAAGG
TGGTGAACCACTGCTTACATGATGCCAATACCAGAAGAACCAGATCACTA
GAGTGTGTTTGAAGAACAAAGTCAGGTACTTTAAATCAGGTGAGTCAGGG
CTTACTTCGCATCACAGGTGAATTCTTCAACATGGGTACAACACCTGCTC
CCTGATTTCTATTTTAAGGTGCCGTGAGTTTCAAATGCCTTGTAGTCTCT
TTAATCCCACACACTGTTGTATCCAGAAGTCACACAGGTGAGAAGGGCCT
TTCCCCGACTCACTCAGTATTGCTAATATGGTAAAAAGTGAGAGATTCTG
AGTTAAAACTGTGCCTTTTTTCTCCCCTTGAGAAGTTGAAAGATGGGGGA
AGTAATGACTCAAGCTGCTTCCACTGCGTGGTGGAGCAGAAAACTGAGAG
CCAGCTGCCGGGACCAGCTAGGGACTACGGATTCATTACCTCCTTTCCTT
ATCTGAATCAGAGACTGAGTAACAGCCTCAAAACGGCTCCCTCACAGCAG
CGCCATGGTATTTCAATTCTTTGCTATTTGGCGAATGTTTCGCTGCAGTG
CAGGTCTCAGCCAGTTGTGGACTACTTAAAGCTGTGACAGAGCAACTTTA
TTACCGATTTCCCCAAGAGGAGAAGCAGCCCTTTTTAAAAAAATATACCT
TAATTCCCCCCGGAGAAAAAAGGGGAGCCCTTCCCTTGGGTCACCCCCCC
TTATTTTGGGCAACTTTGGAAGATTTTTGTGTTGAAAATTGGGATAAAGA
GGCCCAATGGGTGGATGGAGTTTTTACCCCCAAAAGCCCAAGAGGTTTTC
AAAATTTTTTCACACCAAATACCTTTGCTAAAAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_g02.b1 MSMg01no049_g02.b1 CHROMAT_FILE:
MSMg01no049_g02.b1 PHD_FILE: MSMg01no049_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:20 2005
         (710 letters)



>mm_chr3_60617040_60618149
          Length = 1110

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                        
Query: 337  agtaacctctttgtaccttgctggtgtgtcacccaacttccttattttcttctgtataaa 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 agtaacctctttgtaccttgctggtgtgtcacccaacttccttattttcttctgtataaa 1051

                                                                        
Query: 397  aagtttgatgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgca 456
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1050 aagtttgatgctcgatttgacaaattacatttagattctacacaacctctcctgtgtgca 991

                                                                        
Query: 457  tctgtctgtcattccatctgacactttgcccacctgccccagagacccattccacgcaga 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  tctgtctgtcattccatctgacactttgcccacctgccccagagacccattccacgcaga 931

                                                                        
Query: 517  caaagggatccagagggtctagaaattagaaattagagcaacatgtaaattttaaaaaat 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  caaagggatccagagggtctagaaattagaaattagagcaacatgtaaattttaaaaaat 871

                                                                        
Query: 577  gatatcaatctcagctcattcattttgcaatttgtcaaagactcatattccattaagata 636
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 870  gatatcaatctcagctcattcattttgtaatttgtcaaagactcatattccattaagata 811

                                                                        
Query: 637  tataactgtatattttaatgttataccgaagctgatatatgagatacaaccgcctttcct 696
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 810  tataactgtatattttaatgttataccgaagctgaaatatgagatacaactgcctttcct 751

                          
Query: 697  agttctctttcata 710
            ||||||||||||||
Sbjct: 750  agttctctttcata 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no049_g02.g1 MSMg01no049_g02.g1 CHROMAT_FILE:
MSMg01no049_g02.g1 PHD_FILE: MSMg01no049_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:20 2005
         (715 letters)



>mm_chr3_60591240_60592354
          Length = 1115

 Score = 1249 bits (646), Expect = 0.0
 Identities = 697/714 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcttgatccaacagagaactattacagccagactcacttcacgattcattggtctagatg 61
           |||||||||||||||| ||||||| ||||||| |||||||| |||| |||||||||||||
Sbjct: 202 tcttgatccaacagaggactattatagccagattcacttcaagatttattggtctagatg 261

                                                                       
Query: 62  ccaattaagaacaaaagcacacagtcagagatagttttcgaccacatcaaaggtttgcaa 121
           ||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 262 ccaattaagaagagaagcacacagtcagagatagttttcaaccacattaaaggtttgcaa 321

                                                                       
Query: 122 aaactatgcatcatgaccccattagaggtctcagagcctctcacaggagttgactaagac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaactatgcatcatgaccccattagaggtctcagagcctctcacaggagttgactaagac 381

                                                                       
Query: 182 ctagaaaaacacagatatttagattatgattcataatggtaacaaaattacaattattag 241
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 ctagaaaaacacagatatttagattatgattcaaaatggtaacaaaattacaattattag 441

                                                                       
Query: 242 ttagcaacaaaaataattttatggttgtggttcatcgggacatgaggaactaactgtatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttagcaacaaaaataattttatggttgtggttcatcgggacatgaggaactaactgtatt 501

                                                                       
Query: 302 aaaggtttgaagcattagaaaggtggtgaaccactgcttacatgatgccaataccagaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaggtttgaagcattagaaaggtggtgaaccactgcttacatgatgccaataccagaag 561

                                                                       
Query: 362 aaccagatcactagagtgtgtttgaagaacaaagtcaggtactttaaatcaggtgagtca 421
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 562 aaccagatcactagagtgtgtttgaaggacaaagtcaggtactttaaatcaggtgagtca 621

                                                                       
Query: 422 gggcttacttcgcatcacaggtgaattcttcaacatgggtacaacacctgctccctgatt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggcttacttcgcatcacaggtgaattcttcaacatgggtacaacacctgctccctgatt 681

                                                                       
Query: 482 tctattttaaggtgccgtgagtttcaaatgccttgtagtctctttaatcccacacactgt 541
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctattttaaggtggcgtgagtttcaaatgccttgtagtctctttaatcccacacactgt 741

                                                                       
Query: 542 tgtatccagaagtcacacaggtgagaagggcctttccccgactcactcagtattgctaat 601
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgtattcagaagtcacacaggtgagaagggcctttccccgactcactcagtattgctaat 801

                                                                       
Query: 602 atggtaaaaagtgagagattctgagttaaaactgtgccttttttctccccttgagaagtt 661
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 802 atggtaaaaagtgagagattctgagttaaaactgtaccttttttctccccttgagaaatt 861

                                                                 
Query: 662 gaaagatgggggaagtaatgactcaagctgcttccactgcgtggtggagcagaa 715
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 862 gaaagttgggggaagtaatgactcaagctgcttccactgggtggtggagcagaa 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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