Query= MSMg01no049_k03.b1 MSMg01no049_k03.b1 CHROMAT_FILE:
MSMg01no049_k03.b1 PHD_FILE: MSMg01no049_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:51 2005
(610 letters)
>mm_chr3_42268322_42269331
Length = 1010
Score = 1065 bits (551), Expect = 0.0
Identities = 596/611 (97%), Gaps = 2/611 (0%)
Strand = Plus / Minus
Query: 1 gtatagagaagtagttaaaggtaccatgacaaccaagttcccatttaatatctaacctac 60
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct: 810 gtatagagaagtagttaagggtaccatgacaaataaattcccatttaatatctaacctac 751
Query: 61 ttggatgctcatgagttcctccatttggaacaaaaaaagaacctgaaattcacattcatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 750 ttggatgctcatgagttcctccatttggaacaaaaaaagaatctgaaattcacattcatt 691
Query: 121 tgctgcgaagctaaaatcatgaacaaatagctgatgaagtctcaactggaaacaatgtct 180
||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 690 tgctgggaagctaaaatcatgaacaaatagctgatgaagtctcaactggaatccatgtct 631
Query: 181 gagtacaaaatatattctttctatagcactacttattcacagatctgacacctgcttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagtacaaaatatattctttctatagcactacttattcacagatctgacacctgcttttc 571
Query: 241 actattaaatgctgtgtacatataaactattattctacagctcacatgaacagatagtaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 570 actattaaatgctgtgtacatataaactattattctacagctcacatgaacatatagtaa 511
Query: 301 acaaaactgtagaggctaatgaggtgctagcttctttgaacactcccgtgaccatttcac 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 510 acaaaactgtagaggctaatgaggtgctagcttctatgaacactcccgtgaccatttcac 451
Query: 361 attcattaacttaaagggccagagcactcacctcatctagcattgcagataatagctgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 attcattaacttaaagggccagagcactcacctcatctagcattgcagataatagctgac 391
Query: 421 cccacccaaataacaggatac-ggaagtattgacataaaataatggagtcacatcttcca 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccacccaaataacaggatacgggaagtattgacataaaataatggagtcacatcttcca 331
Query: 480 agtagtgaaaggattaaaatccattcagagataaaagaagcaaaatagactttcaaaatg 539
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 agtagtgaaaggattaaaatacattcagagataaaagaagcaaaatagcctttcaaaatg 271
Query: 540 taaattacttcttccatagcaacagctgataatgtactaactctaggagtcaaataaatt 599
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 270 taaattacttcttccatagcaacag-tgataatgtactaattctaggagtcaaataaatt 212
Query: 600 attcaaggaca 610
|||||||||||
Sbjct: 211 attcaaggaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_k03.g1 MSMg01no049_k03.g1 CHROMAT_FILE:
MSMg01no049_k03.g1 PHD_FILE: MSMg01no049_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:51 2005
(667 letters)
>mm_chr3_42163953_42165021
Length = 1069
Score = 1176 bits (608), Expect = 0.0
Identities = 654/674 (97%), Gaps = 12/674 (1%)
Strand = Plus / Plus
Query: 1 ttgcttttctatttttctgaacttgttgctattcc---ttacaataggcacttaaagctg 57
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ttgcttttctatttttctgaacttgttgctatt--aaattacaataggcacttaaagctg 258
Query: 58 tcaggagcattggctgtggcacaagagtctccagcctctctgttcctgcaggagctatgg 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tccggagcattggctgtggcacaagagtctccagcctctctgttcctgcaggagctatgg 318
Query: 118 aaagacagtcttctttcgctaaggtgcatttaaaaactagaaccttgagcttctaaaggg 177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaagacagtcttctttcgctaagatgcatttaaaaactagaaccttgagcttctaaaggg 378
Query: 178 aatgagaatgaaacaacagcacaaaacaagcaataacggggggg----cagttttataat 233
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 aatgagaatgaaacaacagcacaaaacaagcaataacgggggggggggcagttttataat 438
Query: 234 acaattttcttttcctatgggattcttgtaagaactgagcactgtcaagcttgtctggca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaattttcttttcctatgggattcttgtaagaactgagcactgtcaagcttgtctggca 498
Query: 294 tggcaaagataattgctagccaagaagaaatctatcataataagaaggatgggaataatt 353
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 tggcaaagataattgctagccaagaagaaatctatcaaaataagaaggatgggaataatt 558
Query: 354 gggcatcagacatccacatgaagagagaagttactaatctcttgctgttgaggatgaggg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gggcatcagacatccacatgaagagagaagttactaatctcttgctgttgaggatgaggg 618
Query: 414 tgatgtaaatgaaggcactgaaggagacccattccacacttctcaatgacatgtcatttg 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 619 tgatgtaaatgaaggcactgaaggagacccattccacacttctcaatgagatgtcatttg 678
Query: 474 cgaaagttcttcccatcagataagaatatgctgaagtgagggttttctcacttgtcatca 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaaagttcttcccatcagataagaatatgctgaagtgagggttttctcacttgtcatca 738
Query: 534 actggttgtctgaaataacatactttatttcaaaaggaaatgtgactgagagctcccgtt 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 actggttgtctgaaataa-atactttatttcaaaaggaaatgtgactgagagctcccgtt 797
Query: 594 tgcctttcaaatgatcatttcattctcatttcccacagttcagcattttttttctctgag 653
|||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct: 798 tgcctttcaaatgatcatttcattttcatttcccacagttcagcattttct--ctctgag 855
Query: 654 agtcacatttctgg 667
||| ||||||||||
Sbjct: 856 agttacatttctgg 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
