Query= MSMg01no049_k06.b1 MSMg01no049_k06.b1 CHROMAT_FILE:
MSMg01no049_k06.b1 PHD_FILE: MSMg01no049_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:52 2005
(683 letters)
>mm_chr3_114007017_114008099
Length = 1083
Score = 714 bits (369), Expect = 0.0
Identities = 378/381 (99%)
Strand = Plus / Minus
Query: 303 cagacctggaagtcctctactgtatgtgtgctggggcctcatatcagctggtgtatgctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 cagacctggaagtcctctactgtatgtgtgctggggcctcatatcagctggtgtatgctg 1024
Query: 363 cctgtttggtggcccaggtttgagagatctagggagtccagataatttgacactgctggt 422
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 cctgtttggtggtccaggtttgagagatctagggagtccagataatttgacactgctggt 964
Query: 423 catcctacaggattgcccttcttctcaggttctttcagccttccctaattcaacaacagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 catcctacaggattgcccttcttctcaggttctttcagccttccctaattcaacaacagg 904
Query: 483 ggtctgctgcttctctccatcatagcacaaggcaatttcacagatatttatccccggttc 542
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 903 ggtctgctgcttctctccatcatagcacaaggcaatttcatagatatttatccccggttc 844
Query: 543 tcattttgagtaacattctcagttttaagaaaggaactcatcagagctgtccttccaaac 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tcattttgagtaacattctcagttttaagaaaggaactcatcagagctgtccttccaaat 784
Query: 603 gctgtttgtgctcttaggcttgaacgtatgcttgtggagatggggatggcaagtcggtac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gctgtttgtgctcttaggcttgaacgtatgcttgtggagatggggatggcaagtcggtac 724
Query: 663 aagagcttgcaacatcctaca 683
|||||||||||||||||||||
Sbjct: 723 aagagcttgcaacatcctaca 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_k06.g1 MSMg01no049_k06.g1 CHROMAT_FILE:
MSMg01no049_k06.g1 PHD_FILE: MSMg01no049_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:52 2005
(670 letters)
>mm_chr3_113946598_113947666
Length = 1069
Score = 1187 bits (614), Expect = 0.0
Identities = 650/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 5 atttcaaaattcctgataaaactatccatttacagcagccaaaagcttattggacctttt 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 atttcaaaattcctgataaaactatccatttacagcagcaaaaagcttattggacctttt 264
Query: 65 taactacatgtcttaataaaattgaatcacagaattattatatgggttaaatcactgatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taactacatgtcttaataaaattgaatcacagaattattatatgggttaaatcactgatt 324
Query: 125 tccttttcaacctaagatcaataatgtgtaatgatttttttaaagaaagagtagaattcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttttcaacctaagatcaataatgtgtaatgatttttttaaagaaagagtagaattcc 384
Query: 185 gataaagtataggagtgtagaattgatatgtcgatagaatcccagcagtgattactgggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gataaagtataggagtgtagaattgatatgtcgatagaatcccagcagtgattactgggt 444
Query: 245 ttttcttacctagtcctacagtacacttattgtttggatgttttttgttggtttgtgaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcttacctagtcctacagtacacttattgtttggatgttttttgttggtttgtgaag 504
Query: 305 tattgcaattacagcactataggcaagtatgctctaaaactgagttatagctacaatacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattgcaattacagcactataggcaagtatgctctaaaactgagttatagctacaatacc 564
Query: 365 tgaaacagtttttttttcattaagtgccttatctcagttattgaaagttcttgtttatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaaacagtttttttttcattaagtgccttatctcagttattgaaagttcttgtttatta 624
Query: 425 ataggctctgatagataattttgtacttttactaataaaaagctattttatagacttaca 484
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaggttctgatagataattttgtacttttactaataaaaagctattttatagacttaca 684
Query: 485 atgaattcagctttttttactgaaaaggtttttgttaaaacattccaataaaaaacaatg 544
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 atgaattcagctttttt-attgaaaaggtttttgttaaaacattttaataaaaaacaatg 743
Query: 545 cagatatattgtataacctaaattcgtagtacttagatgttttaaaatataatgggaaaa 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagatatattgtataacctaaattcgtagtacttagatgttttaaaatataatgggaaaa 803
Query: 605 taaatacttatgtaaaatccttttctaatatctactgttttctgagtaaatgtggggcgc 664
|||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 taaataaatatgtaaaatcattttctaatatctaatgttttctgagtaaatgtggggcgc 863
Query: 665 cg 666
||
Sbjct: 864 cg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
