Query= MSMg01no049_k07.b1 MSMg01no049_k07.b1 CHROMAT_FILE:
MSMg01no049_k07.b1 PHD_FILE: MSMg01no049_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:52 2005
(417 letters)
>mm_chr3_43316992_43317807
Length = 816
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%), Gaps = 1/409 (0%)
Strand = Plus / Minus
Query: 9 gaattcttcctgtcaaaaggaaatgcttttacaagaatatattaagaagtttgagcaggt 68
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 460 gaattcttcctgtcaaaaggaaatgcaggtacaagaatatattaagaagtttgagcaggt 401
Query: 69 gatcaatctgcagaaattgcagaaacaattctcagacatcacagttcaaatctctttctc 128
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 400 gatcaat-tgcagaaattgcagaaacaattctcagaaatcacagttcaaatctctttctc 342
Query: 129 ttcaaactgttagtgtcagaaaggattctctagaaaaagaactaaaacagtgtgctcact 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttcaaactgttagtgtcagaaaggattctctagaaaaagaactaaaacagtgtgctcact 282
Query: 189 aatagtattttcctttaaggaaataagttctgctattctggagtgtaccaaaactatagt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aatagtattttcctttaaggaaataagttctgctattctggagtgtaccaaaactatagt 222
Query: 249 ctacaaaacaatctgtgggaaagaaaagggggctggagaagagggagaagggaggatagc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctacaaaacaatctgtgggaaagaaaagggggctggagaagagggagaagggaggatagc 162
Query: 309 ccatgtctggccagagttccttctatgctctgggcaggcagatgtgggagggctgccagg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ccatgtctggccagagttccttctatgctctgggcaggcagatgtgggagggctgccagg 102
Query: 369 ctctgtccttggtgggcatctacgccactgaccccactcgacagagggt 417
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctctgcccttggtgggcatctacgccactgaccccactcgacagagggt 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 816
Length adjustment: 9
Effective length of query: 408
Effective length of database: 807
Effective search space: 329256
Effective search space used: 329256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_k07.g1 MSMg01no049_k07.g1 CHROMAT_FILE:
MSMg01no049_k07.g1 PHD_FILE: MSMg01no049_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:52 2005
(479 letters)
>mm_chr3_43228256_43229134
Length = 879
Score = 814 bits (421), Expect = 0.0
Identities = 459/473 (97%), Gaps = 4/473 (0%)
Strand = Plus / Plus
Query: 7 cccagaattcacataaaaacccctatgccatagtttccttctctaatcccaagagacgga 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 207 cccagaattcacataaaaacccctatgccatagtttttttctctaatcccaagagatgga 266
Query: 67 agatgacagaaaaattggcctaaggctgtaatatgcagcatgtaatgtagccacaatcat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agatgacagaaaaattggcctaaggctgtaatatgcagcatgtaatgtagccacaatcat 326
Query: 127 taaattaagaccttgtctctgaagttgctaaaacagtgtcctgtaacatgtaaatgtgtt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taaattaagaccttgtctctgaagttgctaaaacagtgtcctgtaacatgtaaatgtgtt 386
Query: 187 ctgtggaagcagcccatgctgagtccatttccatctctctttgcttctttctccctgtct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgtggaagcagcccatgctgagtccatttccatctctctttgcttctttctccctgtct 446
Query: 247 ccctgtcttctcaatgtctctgtgtctgtttgtctgtgtttctcttcctctccctccctc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 ccctgtcttctcaatgtctctgtgtctgtttgtctgtgtttctcttcctctccctccttc 506
Query: 307 ttctctcttttcacacacattcacacaca--cactcactcacacacacacacacacacac 364
|||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 507 ttctctctcttcacacacattcacacacattcacacacacacacacacacacacacacac 566
Query: 365 acacacacacacacacaccctgagtcacatttatatacaaaaaataaatcctcaaaattt 424
|||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct: 567 acacacacacacacacac--tgagtcacatttatatacaaaaaataaatctttaaaattt 624
Query: 425 aataagtaaataagaatgtcttctgcttgtgcaatactaaggaaagtaaacac 477
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 aataagtaaataagaatgtcttctgcttgtgcaatagtaaggaaagtaaacac 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
