Query= MSMg01no050_a02.b1 MSMg01no050_a02.b1 CHROMAT_FILE:
MSMg01no050_a02.b1 PHD_FILE: MSMg01no050_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:44 2005
(586 letters)
>mm_chr3_42047296_42048283
Length = 988
Score = 975 bits (504), Expect = 0.0
Identities = 562/582 (96%), Gaps = 2/582 (0%)
Strand = Plus / Plus
Query: 5 gaattctttagctaaggatttaccctttaatgatctatgagttctgtcagatcagcagct 64
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagctaaggatttatgctctactgatctatgagttctgtcagatcagcagct 264
Query: 65 ttatcctcatgggtcctgttagtttgctaaactgctgttcatagacctggctcatagaag 124
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 ttatcatcatgggtcctgttagtttgctaaactgctgttcatagatctggctcatagaag 324
Query: 125 ttctccaggaagtacaatcggaacttaaaaggaagaacatcagaagccacttcattcacc 184
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 325 ttctccaggaagtacaatcggaacataaaaggaagaacatcagaggccacttcattcacc 384
Query: 185 cacctgaacaaaagttcagaggatcactgtgtccttgacttctgtaggtaaaggagcttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacctgaacaaaagttcagaggatcactgtgtccttgacttctgtaggtaaaggagcttc 444
Query: 245 atttttt--attgctcaagatcatctttcatttcagagcatgcagctgttatcaagtcag 302
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttttttattgctcaagatcatctttcatttcagagcatgcagctgttatcaagtcag 504
Query: 303 gtggcacatccctggtgttctggagatgaactcctaggctaactcctgaggctgcccact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggcacatccctggtgttctggagatgaactcctaggctaactcctgaggctgcccact 564
Query: 363 ctagtgagacttcgactgagttaccaaggacagcttctttgtgccttaggccaggcaata 422
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ctagtgagactttgactgagttaccaaggacagcttctttgtgccttaggccaggcaaca 624
Query: 423 ttaaaatttggaaaaatattgttgcctacttatgaaaatactgtaataaccaaatgacac 482
||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ttacattttggaaaaatattgttgcctacttatgaaaatactgtaataatcaaatgacat 684
Query: 483 tattataccaggaattacagtatttggcacacagtaggcttaacccatgcatcgcaaata 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 tattataccaggaattacagtatttggcacacagtaggtttaacccatgcatcgcaaata 744
Query: 543 ttttaacctagaactcttcctgtccaaaggaaagacagggac 584
||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 745 ttttaacctagaaattttcctgtccaaaggaaagacaaggac 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 988
Length adjustment: 10
Effective length of query: 576
Effective length of database: 978
Effective search space: 563328
Effective search space used: 563328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_a02.g1 MSMg01no050_a02.g1 CHROMAT_FILE:
MSMg01no050_a02.g1 PHD_FILE: MSMg01no050_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:44 2005
(681 letters)
>mm_chr3_42235318_42236397
Length = 1080
Score = 1263 bits (653), Expect = 0.0
Identities = 674/681 (98%), Gaps = 1/681 (0%)
Strand = Plus / Minus
Query: 1 aaattttatctgtgaataacagagctttgagatgtgtgttcatctaggacgaataatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aaattttatctgtgaataacagagctttgagatgtgtgttcatctaggacgaataatgag 731
Query: 61 cacactccaaaaagaaagaaaagaaaccataggtgaattgagagggtgctgcatgggctg 120
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cacacttcaaaaataaagaaaagaaaccataggtgaattgagagggtgctgcatgggctg 671
Query: 121 tttaaaaaaaaaaagtctttaggctgcactatctgtcagcagcatattatttccaaccag 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttt-aaaaaaaaaagtctttaggctgcactatctgtcagcagcatattatttccaaccag 612
Query: 181 gccattctaaccattatttaaaattagaagatatactgttgtcgaaccattgcagacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gccattctaaccattatttaaaattagaagatatactgttgtcgaaccattgcagacaag 552
Query: 241 aatctaaagtgacacaaggaatgtccaaggaaagataactggcaatcttatcagatcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aatctaaagtgacacaaggaatgtccaaggaaagataactggcaatcttatcagatcata 492
Query: 301 atgcaataatatgccataaataacttatccctgacaataacccaagtgttaaaactcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgcaataatatgccataaataacttatccctgacaataacccaagtgttaaaactcagg 432
Query: 361 atataatttacattaacatgtcattgatttattctggctcagggtcattattattcacga 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 agataatttacattaacatgtcattgatttattctggctcagggtcattattattcatga 372
Query: 421 cccacccttagatgtatttaatttgctttctttggtaggagaaaagaggccaaaaatgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cccacccttagatgtatttaatttgctttctttggtaggagaaaagaggccaaaaatgga 312
Query: 481 agctcttgcttaaagaactaacctcaacttctgtttataaatgcaccagtaacacatatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agctcttgcttaaagaactaacctcaacttctgtttataaatgcaccagtaacacatatc 252
Query: 541 ttatgtcatactggagagcaaataaaaagactctataatctggaatggtccatatatgta 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttatgtcatattggagagcaaataaaaagactctataatctggaatggtccatatatgta 192
Query: 601 tatgtatgtatatattcatatatgcttataatcacatatggtttatactgttctcagatt 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 191 tatgtatgtatatattcatatatgtttataatcacatatggtttatactgttctcagatt 132
Query: 661 ccattgcagacctatagaaaa 681
|||||||||||||||||||||
Sbjct: 131 ccattgcagacctatagaaaa 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
