BAC Information

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BAC

Clone NameMSMg01-050J22
Chromosome3 (Build37)
Map Location 49,025,042 - 49,025,366
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050J22.T7 (MSMg01no050_j22.b1)MSMg01-050J22.TJ (MSMg01no050_j22.g1)
ACCAG279644AG279645
length1,2041,214
length of high quality
(start - end)
575 (82 - 656)582 (77 - 658)
definitionCHROMAT_FILE: MSMg01no050_j22.b1 PHD_FILE: MSMg01no050_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:10 2005CHROMAT_FILE: MSMg01no050_j22.g1 PHD_FILE: MSMg01no050_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAACACTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATAATTCCTGGGGTTATTTGATTTTCTGG
GGTCCACCTTCTTGAGTTCTTTATATATATCGGATATTAGTACCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAAACTGTTGGTGGTCTTTTTGT
CTTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGT
CCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTATTCTATTC
AGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTATC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTTCTTAATCATCT
TAGATTTGACCTTAGCATAAGGAGATCTATGCAAAAATCCTCAATAAAGT
TCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATCCATCCTGACC
AAGTAGGTTTCATCCCAGGGATGCAAGGATGGCCCAATATACGGAAATCC
ATCAAGATATTCCCGTATATAAACAAACTCAAAGACAAAAACCACATGAT
CATCTCGTTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCA
TGATAATAGTCTTGGAAAGATCATGAATTTCAGGCCCACACCTAACCATG
ATAAAACCAATCTACAGCAAACCAGTAGCCATCATCAAAGTAAATGGTGT
GAAGTTGGAAAAAATCCCACTACAATCATGTACTAGACCAGGTTGTCCAC
TCTCTCCCTACCTATTCAACATTGTAACTTGACGTCCTAGCCTGCGCAAT
TAGACCACTAAGCGAGATCTAGGGGTATTACAATTTGTAAAAACAAGAAA
TTCCAATATCCCCTCTTTGTCTTATGCTATGATTAGATTTTACGTGACCC
TTAAAAATTTCCTCTATAATATCTTCCTAATCCTGGATAAACATCCCCCC
ATGAAAAATATTGGGATTTAAAATTTAATTTCAGGCCAGTTCAATGGTTC
TCTTCTGGTTCCCCTAGCGATATATCTGGTTTGCATAAATAAAATTTTAG
GGCAATATTTTTCCCTCTTTTTCTAACTAGTCTCCATTATCAACTTTAAA
ATATCATCTTGTTCCAATGAACTCCCACACTCTTGTGGTATTGGAAATGA
ATTA
NTTTTGAGTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCTTTTAAGAATTATTTAATACCTATATCCATTT
TTATTTGCCTTTTTGTTTTGTTCAATTAATTATAATAGTTCCAGTTTTAT
CCATCATAAGGTTAACCTTTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATTATTGAGACAGGGTTTCTCTGTATAGC
CCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCTGGCCTCGAACTCAG
AAATTCTCCTGCCTCTGTCTCCCAAGTGTTGGGATCAAAGGCGTGCACCA
CTACTGTCCAGCTTTTTTAACCTTTAAATTTTATGTAGTAAAAAATTACT
CACCTTATTTATAATGTTTCTTCTTGACTTTACAAATAACTAATTTTATA
ATGGACATTCCATATAGATTAATATTTTCCTGCTTTGTTCGGTTGATGAC
AGTCCATCAATACCATTATTTATTTTGATGCTCTTATTAAAAACAATTTA
TATCTTTTGTACTTTCTTCTCAGATAAATTATTCTATGAAAATTATTCAC
TTTCATGTGGCCAATGGAGAAAAGTCCATTTTAATGTGGCATTTTTTCCC
TCTCACAGCGTATACCACCTATCCAAAGAATCCTTCCTAATTCTAGCCGG
AAAATAATATTTCCAATCTTGGACTTTTGCTTCAACAAAATCATTGATTT
TGGTCATCATTACTTACTTATCTTTTAGAGAAAGAACTTCTTTCCTATCG
TGAAAGTGATAAACTATTCTTGTATGTCAGTGCTTATCCATGTGCTTGGT
GCATTTTTCCTTCATATTGTTTACCTTCTTTTCTTATGGTAGAAATTCCT
TACCCATTTAAGAATCTTGAGGTCTTTTTTATCGTTTTCCTCCTTCCTTT
TTAAGGGTCATTCAATATGCTATCCTATCTCCTCCCGGGTTTGACCTGGC
ACCATTTTCTAAAATCTACGTTTTTATTTCTCTTTTTGATCGTTTCTTTT
CTTATTTCTCTAAAACCTTTTTTCCTTTTTGTGGCCTTTTAATTCCCATG
GTATTTGCACATATCACATTTTCTTCGTTCTCATATATTTTCCCTATTTG
GTCCCGGTCTCCATAACCCCATCTTTATTACCTCTATTACTATTATATCT
CCCTTTGTTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_j22.g1 MSMg01no050_j22.g1 CHROMAT_FILE:
MSMg01no050_j22.g1 PHD_FILE: MSMg01no050_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:11 2005
         (582 letters)



>mm_chr3_49024385_49025366
          Length = 982

 Score =  574 bits (297), Expect = e-168
 Identities = 318/325 (97%)
 Strand = Plus / Minus

                                                                       
Query: 255 gggatcaaaggcgtgcaccactactgtccagcttttttaacctttaaattttatgtagta 314
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gggattaaaggcgtgcaccactactgtccagcttttttaacctttaaattttatgtagta 923

                                                                       
Query: 315 aaaaattactcaccttatttataatgtttcttcttgactttacaaataactaattttata 374
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 922 aaaaattacacaccttatttataatgtttcttcttgactttacaaataactaattttaaa 863

                                                                       
Query: 375 atggacattccatatagattaatattttcctgctttgttcggttgatgacagtccatcaa 434
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 862 atggacattctatatagattaatattttcctgctttgttcggttgatgatagtccatcaa 803

                                                                       
Query: 435 taccattatttattttgatgctcttattaaaaacaatttatatcttttgtactttcttct 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taccattatttattttgatgctcttattaaaaacaatttatatcttttgtactttcttct 743

                                                                       
Query: 495 cagataaattattctatgaaaattattcactttcatgtggccaatggagaaaagtccatt 554
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 742 cagataaattattctatgaaaattattcactttcatgtggccaatggagaaaagtctatt 683

                                    
Query: 555 ttaatgtggcattttttccctctca 579
           |||||||||||||||||| ||||||
Sbjct: 682 ttaatgtggcattttttctctctca 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)