BAC Information

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BAC

Clone NameMSMg01-050O10
Chromosome3 (Build37)
Map Location 132,538,830 - 132,539,109
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858
Downstream geneNpnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O10.T7 (MSMg01no050_o10.b1)MSMg01-050O10.TJ (MSMg01no050_o10.g1)
ACCAG279836AG279837
length1,2241,242
length of high quality
(start - end)
455 (73 - 527)281 (119 - 399)
definitionCHROMAT_FILE: MSMg01no050_o10.b1 PHD_FILE: MSMg01no050_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:49 2005CHROMAT_FILE: MSMg01no050_o10.g1 PHD_FILE: MSMg01no050_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCGGGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAGCTCTGACCCCTTTTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCA
CCCTCTTGAGTTCTTAATATATTGGATATTAGTCCCTTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTATCTTATTGA
CGGTGTCTTTGGCCTTACAGAAGCTTTGCAATTTCATGAGGTCCCATTTG
TCAATTCTCAATCTTACAGCACAAGCCATTGTTGTTCTATTCAGAATTGT
TTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTGCTCCTCTATGA
GTTTCAGTGTCTCTGCTTTTATGTGGAGCTCCTTGCTCCACTTATATTTG
ACCTTAGCACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACACGA
TAACAACCAGTTGTGCCAGCACCAACTGTTGAAAATGCTGTCTTTCTTCC
ACTGCATGGTTTTACCTCCCTTGTCGAAGATCAAGTGCCCATAGGTGTGT
GGGCTCATTCCTGGGTCTTCAATTCTATTCCATTCCGTCCACTTGTCTGT
CTCTATACCAGTACCACGCAGTTTCTATCACAATTGCTCTGTAGTATAGC
TTTAGGTCAGCACTGGTGACCTCCCCCTAGGTTCTTTTATCCTTGAGAAG
AGTTCTTGCTATCCTACGTTTTTTGTTACTCCCGACGAATTTGCAGAATC
GCTCTTTTCTAACTCGTCGTATATTTTGATTTGGAATTTTTGATCGTGGA
TTGCATTTGAATCTTGTACATTGCTTTTTGTCAAGATTAGCCATTTTTTT
TAATTGCTTGTATCCTTGCAAATTCCATGACTTTTGGCGATAATCCTCTC
CAGCTTTCCGGAAAACCCTTCCTTTAATTTCTTTTCTTTCACACAAATTT
TAAACTTTCTTCATCCTTTTAAGATCTTTTTCCCTTTTCTTACATTATCA
TTCTTTTCTCCTCTAATACTTTTTAATCTTTATTTCTTCTATATACTCTC
GTTAATTTTCGTCCTTTTTTCCCCTTATTCCTCTTCTTCTCTTCCTCTGT
TATTTACTCCTTCTTTCTGTCCACACATTATAGCCTCCTTCTTACCTGCT
TTCTTCTCTTACTGACTATTCTTTATCTTCTTTGCTCTTTCCTCTTCCTC
CGTAACTCTATGCTTTCATCTATT
NNGGATCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTCTCAGAATCTGATCCTGTGGAGTGGTTTTT
TGTTTTGCCTTGTATCTGGTATCCAGCCACTGAAGCACTTGTTCGGATGA
AAAGCTATTCTTAAGCAAATTCATTGTGCACCCGGCTCTGAGGCAGGTGC
TCTGGCATTAGCGATGAGTGATAAGTATGGGTGATTTTCTTCCAGGACTG
GCATGAGTCACAAATGCACCTGATTTCTCATCTCTGGTTAGCCTCACAGG
TAATCCAGCCTTCAGTCTTCCAGAACGAAACTTCGTTACAAACAAGAGTA
TCTAAACATTGACTTTTAACCCTCAGTGCAGTAACGAGTTCAACTAGAAC
TGTTTATAGAACAGTGTGGGTGGGCTTACCCTAGAGCCAGGAAACTCACT
CTTTTTTCCCCCCCTGCTAAACCCTCTCTGAGGCTCAATGAAAAGATGGG
ATGCGCAACATTGCGTTTTGTTGTTCTTTATCTCCTGTGGTGGGGAATGG
GGCAGGGGTACTCAAATGCTTTTGGATAGAGAAAGATTGACATTAGACAG
CCCCCCACCTGTCTGTCTCTTAAGGACAACCATCTGGCTGCGCACGTCTC
GGCTTCCCAGAGAATCTCACCTACTGCGCTACATCCCAGGGCCTCCAGGG
AATTCCCTGGATCACTGGAGCAACACAGGTAACCAAAAGCGGCCCGCAAT
TACAAAGGCGCTGTGAACCATGTCCCAGAACTTCGTTAGGCTTCTGGAAT
CCTCACACGGCCTTCTTCTCCAAAAACGGCCCATATTCTCCTGAGAAAAA
AATCCACTCGATTATGCCTGCCCTCCTTTCCCAAAAAATTTCTAACACCT
GCCTTTGCCATATGAAAATATCAACACCACAGGTTCCCACCTTACTACGG
AAAATTGGACTTCTGTTTACTCTATCCGATATTGCTCTTGTCCTCTTCAT
ACTGTGGCGTTTTTATAATATCTCAAATCTCTTTTACTATCTTATCATAA
ACCTATATCTCGCTAAAGTAGCTTTATAATCTATTCTTTCCTACCCCCAA
TATATGCCTCATCTTACAAATATTCCTGATATCTTTCCCTCTCTTGCTTT
CTCTTTTCCATGTGTAGACTATTTGCTAATCTTTTATTTCCCTGATATTT
CTCTGTCCATCTTTATTATCGTCTATCTTCTCTTTGCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o10.g1 MSMg01no050_o10.g1 CHROMAT_FILE:
MSMg01no050_o10.g1 PHD_FILE: MSMg01no050_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:49 2005
         (281 letters)



>mm_chr3_132538630_132539309
          Length = 680

 Score =  474 bits (245), Expect = e-138
 Identities = 272/281 (96%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatccagccactgaagcacttgttcggatgaaaagctattcttaagcaaattcattgtg 60
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 201 gtatccagccactgaagcacttgttgggatgaaaagctattctcaagcaaattcattgtg 260

                                                                       
Query: 61  cacccggctctgaggcaggtgctctggcattagcgatgagtgataagtatgggtgatttt 120
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtggctctgaggcaggtgctctggcattagcgatgagtgataagtatgggtgatttt 320

                                                                       
Query: 121 cttccaggactggcatgagtcacaaatgcacctgatttctcatctctggttagcctcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccaggactggcatgagtcacaaatgcacctgatttctcatctctggttagcctcaca 380

                                                                       
Query: 181 ggtaatccagccttcagtcttccagaacgaaacttcgttacaaacaagagtatctaaaca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ggtaatccagccttcagtcttccagaacgaaactttgttacaaacaagagtatctaaaca 440

                                                    
Query: 241 ttgacttttaaccctcagtgcagtaacgagttcaactagaa 281
           ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 441 ttgacttttaaacctcagtgcagtaaagagtt-aactagaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)