BAC Information

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BAC

Clone NameMSMg01-051A18
Chromosome3 (Build37)
Map Location 94,205,500 - 94,381,803
singlet/doubletdoublet
Overlap geneLingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27
Upstream geneEG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc
Downstream geneLOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051A18.T7 (MSMg01no051_a18.b1)MSMg01-051A18.TJ (MSMg01no051_a18.g1)
ACCAG279938AG279939
length1,3531,409
length of high quality
(start - end)		143 (130 - 272)143 (137 - 279)
definitionCHROMAT_FILE: MSMg01no051_a18.b1 PHD_FILE: MSMg01no051_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:10 2005CHROMAT_FILE: MSMg01no051_a18.g1 PHD_FILE: MSMg01no051_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,381,661 - 94,381,803)(94,205,500 - 94,205,642)
sequence
NNTTTCATTTGGCGCTAAGACTACTATGGGAGAGGATCCGCGGAATTCCA
ACTAAGGGGAACACCTTTTACCAAGCAGTCTGTCCAGTTGTCCCTACTTA
AGTGCTTTTAGTTGTTGTCTTGCACCCCAGGTGTATTATCATTTAGAGAC
AAATGATGATAATCATTGTGTCATCTCGCAGTGTCTATGGTGTGTTACAG
TTTGCAGTGCAATATATATTCATTTGAACTTCAGGACAGCCTTCTGGAAG
GAAAGGTTTAAAGCTCCTTGGGGGCAGGTACTGTGTTAACTATTATGTTT
ATTGAATCCTAAATATGTTGTGTAATCTTGGTTTTCTTTAGTGAATACTT
GAATATATTAGATATGAGTATAATTATCCCTGAGTTGTAATATTTTTTTG
TATTGAGTGACATTCAGAGTTATATCTTGTGTTTTATCATGCTCTTTTTT
TTTAGCCCCCCTGTTTTGTTTATTGCCTGTTTAAAAAAAAAAAAGTTTAT
TTTTTATTTTTCTTTCGTTATCTTTTATTTTTTTTTTTCTGATTTTTTAT
CATATTTATTTCTTTTTTATTTTTCTTTTTATTTTTATTTTTTTTTAATT
TTTTCTTTCTATTTTTTTGTTTTTTTTTTTTTTCTTTTTATTATTTTTAT
TTTCTTCTTTTATTTCTTCTTCTTTTTTTTTCTTATTCTCTTTTTTCATT
TTCTTATTTGTTTCTTTTATCCCTCTTTTTTTTTTTTTTTTTTCCCTTTT
TCTTTTTTAATTTTTTTTTTTTTTTTTTTTAATTCTCTTTTTTTTTACCT
TTTTTTTATTATTTTTTCTTTCTTATCTTTTCTTATTTTTATTTTTTATA
TTTTTTTCTTTGTTTTTATTTTTTTTTATTATTCTTTTTTTTCTTTTTTT
CTTTTTTTTATTTCTTTTATCATATTTTTTTTTTTTTTATTTTATTATAT
CTTTTTTTTTTTTTTTTTCCTTCTTTTTATTTTTTATCTTTTTTTTTTTT
TTTCTTTTTATTTTTTTTTTTTTACCTTTTTTTTTATTTCTATCCCCCTT
TTTTTTTTTTTCTATATTTTTACCTATTTCTATATTTTTTTATTTTTTAT
TTTTATTACATTTATTACTTATTTTTTTAATATTTTGTTCTTTTTTTATA
TTTTTATATTCTTTTTATCCTTTTTTTTTTATATTTTTTTCTTACTTTTT
ACTTTTTTTTATTTTATTCTTCTTTATTTTCTTTTCTTTTATTATTGTTT
TTTTTTATCTAATTTTTTCTATTTTTACTATTATTCTTTTTTATTATTAT
TTATTTTGTATCATTTTCTTTTTTATTTCCCCTTTTTTTTTTTTTTTTTT
TTT

TTTCCGTGAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTGGTCTCATAAATACAGGGGAAAGCGCCT
TACAGGGCCATGCAGGGTTCTTTCCCCACCCCTCAGTCCCTTAAACTTTC
CACCACAGAAATCAGCTTGACTAGGGATCATGAACAGGAAGTACTTGGCC
AGTTTTCTATGGCTGCAAAGGAGAGATTTCCCCATTAAGGTACATCAAGT
CTCCCTGGTTGTGTGCCACACTTACTGGCAAGATCCACCTTTCCTCCCCT
TTAAGGAGGTTCGGTGCAGTGTAGGTTTTTCACCTTCTGAAGCCACTTTT
CATAAAAGACCGTTGTATTTTCTATTCCAGTCCTCAGGTTATGGACTTTT
TTTTTGTTCCAAAGTAATGTTTGTCTTCTTTGCTTTCCTATTTACTTCCC
CTTTTTTTTTTCCCCCCCCCCCTTTTATTTTTATCTTGTCTCTATTGCAA
TGATGATTGTTATTTTTCTTTTATTTTTTTCTTCTTATTTTCTTCTTTTT
TTTTTCTTTTGTTTTTTCTCTTATACTTTTTTTTTATTTTTTTTTTTCTC
TATTATTTTTTTTTCTTTTTTTTTTTTCTCTTTTCTTTTCTTTTCTTTTT
ATTTTTTTTTCTTTTTTTTTATTTATTTTTTTTTTTTTTTTATATTTCTA
CCTTTTTTTTTATTTTCTCTTTTTTTTTTTATTTTTTTTATTTTTTCCCT
ACTTTTTTTTCTTTCTTTTTTTTTTTATTTCTTTTTTCATTTTTTCTTTT
TATTTTTTATTCTTATTCCTTTATTTCTTTTTTTTCTTTTTTTTTTTTTT
TTTTTTTTTTTCTTTTCCTTTTATTTTTTTTTTTTTTTTTTTTTCTTTTT
TTTTATTCTTATTTTTTATTTTTTATTATCTTTTATACTTTTTCTGTTAT
TTTTTTATTTTCTTATCTTTCTTTTTACTCTTTATTTTTTTCTTTTTTTT
TATTTCCTTTTATTTTTTTTTGCATTTCTTTTTTTTTTTATATTTTTTCC
CCCCCCCTTTTTTTTATTTTTTTTATTTTCTTTATTTTTTTTTTATTTTT
ATTTTCTTTCTTTCACTGTTTTTTTATTTATTTACTTTTCTTTTTTATTT
TTTTTTATATTTTTTTTTTATCTACTATTTTTTTTTCTTACTATTCTTTT
CCAATTTCTTTATCTTTATCTTTATTTTTAATCTTTTTCTTCTTTATTTA
CCCTCTTATATTGTCTTTCTTTTTTACTATATTTTTATATATTTTATTTT
TATATTTTTTTTCTTTATCTTATTATCTTTATCATTTTTCTTTTTCTTAA
TTTTTTTCTCATGTTCATCTTTCTTCTTTTTCATTTTTCTTGTTATATTA
CTTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_a18.b1 MSMg01no051_a18.b1 CHROMAT_FILE:
MSMg01no051_a18.b1 PHD_FILE: MSMg01no051_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:10 2005
         (143 letters)



>mm_chr3_94381461_94382003
          Length = 543

 Score =  269 bits (139), Expect = 6e-77
 Identities = 142/143 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgtattatcatttagagacaaatgatgataatcattgtgtcatctcgcagtgtctatg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggtgtattatcatttagagacaagtgatgataatcattgtgtcatctcgcagtgtctatg 284

                                                                       
Query: 61  gtgtgttacagtttgcagtgcaatatatattcatttgaacttcaggacagccttctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtgtgttacagtttgcagtgcaatatatattcatttgaacttcaggacagccttctggaa 224

                                  
Query: 121 ggaaaggtttaaagctccttggg 143
           |||||||||||||||||||||||
Sbjct: 223 ggaaaggtttaaagctccttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no051_a18.g1 MSMg01no051_a18.g1 CHROMAT_FILE:
MSMg01no051_a18.g1 PHD_FILE: MSMg01no051_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:10 2005
         (143 letters)



>mm_chr3_94205300_94205842
          Length = 543

 Score =  269 bits (139), Expect = 6e-77
 Identities = 142/143 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccttaaactttccaccacagaaatcagcttgactagggatcatgaacaggaagtactt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccttaaactttccactacagaaatcagcttgactagggatcatgaacaggaagtactt 260

                                                                       
Query: 61  ggccagttttctatggctgcaaaggagagatttccccattaaggtacatcaagtctccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccagttttctatggctgcaaaggagagatttccccattaaggtacatcaagtctccct 320

                                  
Query: 121 ggttgtgtgccacacttactggc 143
           |||||||||||||||||||||||
Sbjct: 321 ggttgtgtgccacacttactggc 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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