MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-051N21
Chromosome	3 (Build37)
Map Location	103,738,567 - 103,738,765
singlet/doublet	singlet
Overlap gene	Rsbn1
Upstream gene	Sycp1, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452
Downstream gene	Phtf1, Magi3, EG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572
Link	Open Mouse BAC browser

Click to get alignment info.

name	Sycp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20957 MGI:105931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr1h5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381463 MGI:3026618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	5730470L24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66641 MGI:1913891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Csde1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229663 MGI:92356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nras (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18176 MGI:97376
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ampd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229665 MGI:88015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dennd2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329727 MGI:3036254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcas2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68183 MGI:1915433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Syt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54524 MGI:1859544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg4a-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102926 MGI:3615624
definition	gene_synonym : Apg4a; Apg4a-ps; Atg4al-ps; Autl2 note : autophagy-related 4A (yeast), pseudogene pseudo : _no_value

name	LOC100043538 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Olfml3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99543 MGI:1914877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hipk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15257 MGI:1314873
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclre1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140917 MGI:2156057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ap4b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67489 MGI:1337130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm566 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229672 MGI:2685412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 30 ESTs, 4 Proteins

name	Ptpn22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19260 MGI:107170
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668452 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rsbn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229675 MGI:2444993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phtf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18685 MGI:1332671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magi3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99470 MGI:1923484
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433634 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433634 MGI:3648205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Lrig2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269473 MGI:2443718
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc16a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20501 MGI:106013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624251 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624251 MGI:3644007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 215 ESTs, 26 Proteins pseudo : _no_value

name	7530404M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329731 MGI:3046463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppm1j (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71887 MGI:1919137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhoc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11853 MGI:106028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mov10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17454 MGI:97054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Capza1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12340 MGI:106227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	St7l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229681 MGI:2386964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043572 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 375 ESTs, 3 Proteins pseudo : _no_value

name	Sycp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45597448 GeneID:20957 MGI:105931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptonemal complex protein 1 transcript_id : NM_011516.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348549 GeneID:381463 MGI:3026618
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_198658.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42491367 GeneID:381463 MGI:3026618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_201622.1

name	Nr1h5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42491363 GeneID:381463 MGI:3026618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 1, group H, member 5 transcript_id : NM_201619.1

name	5730470L24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803299 GeneID:66641 MGI:1913891
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730470L24 gene transcript_id : NM_025679.3

name	Csde1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254097 GeneID:229663 MGI:92356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cold shock domain containing E1, RNA binding transcript_id : NM_144901.2

name	Nras (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111154108 GeneID:18176 MGI:97376
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuroblastoma ras oncogene transcript_id : NM_010937.2

name	Ampd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431239 GeneID:229665 MGI:88015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenosine monophosphate deaminase 1 (isoform M) transcript_id : NM_001033303.2

name	Dennd2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46849717 GeneID:329727 MGI:3036254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 2C transcript_id : NM_177857.1

name	Bcas2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686103 GeneID:68183 MGI:1915433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast carcinoma amplified sequence 2 transcript_id : NM_026602.3

name	Trim33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637827 GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 33 transcript_id : NM_053170.2

name	Trim33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637829 GeneID:94093 MGI:2137357
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 33 transcript_id : NM_001079830.1

name	Syt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111038121 GeneID:54524 MGI:1859544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin VI transcript_id : NM_018800.3

name	LOC100043538 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251421 GeneID:100043538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043538 transcript_id : XM_001480691.1

name	Olfml3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86439988 GeneID:99543 MGI:1914877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin-like 3 transcript_id : NM_133859.2

name	Hipk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754195 GeneID:15257 MGI:1314873
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeodomain interacting protein kinase 1 transcript_id : NM_010432.1

name	Dclre1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778906 GeneID:140917 MGI:2156057
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) transcript_id : NM_001025312.1

name	Dclre1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778965 GeneID:140917 MGI:2156057
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) transcript_id : NM_133865.2

name	Ap4b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385705 GeneID:67489 MGI:1337130
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor-related protein complex AP-4, beta 1 transcript_id : NM_026193.1

name	Ptpn22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679554 GeneID:19260 MGI:107170
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 22 (lymphoid) transcript_id : NM_008979.1

name	Rsbn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906200 GeneID:229675 MGI:2444993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rosbin, round spermatid basic protein 1 transcript_id : NM_172684.2

name	Phtf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305380 GeneID:18685 MGI:1332671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : putative homeodomain transcription factor 1 transcript_id : NM_013629.1

name	Magi3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129792 GeneID:99470 MGI:1923484
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane associated guanylate kinase, WW and PDZ domain containing 3 transcript_id : NM_133853.2

name	EG433634 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701495 GeneID:433634 MGI:3648205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG433634 transcript_id : NM_001013805.1

name	Lrig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299751 GeneID:269473 MGI:2443718
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine-rich repeats and immunoglobulin-like domains 2 transcript_id : NM_001025067.1

name	Slc16a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802927 GeneID:20501 MGI:106013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 1 transcript_id : NM_009196.3

name	7530404M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607129 GeneID:329731 MGI:3046463
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 7530404M11 gene transcript_id : NM_183224.2

name	Ppm1j (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205423 GeneID:71887 MGI:1919137
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1J transcript_id : NM_027982.2

name	Rhoc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680727 GeneID:11853 MGI:106028
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member C transcript_id : NM_007484.1

name	Mov10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678919 GeneID:17454 MGI:97054
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Moloney leukemia virus 10 transcript_id : NM_008619.1

name	Capza1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468886 GeneID:12340 MGI:106227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : capping protein (actin filament) muscle Z-line, alpha 1 transcript_id : NM_009797.1

name	St7l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254198 GeneID:229681 MGI:2386964
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppression of tumorigenicity 7-like transcript_id : NM_153091.2

name	Sycp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45597449 GeneID:20957 MGI:105931
definition	GO_component : GO:0000801 - central element [Evidence IDA]; GO:0000800 - lateral element [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA]; GO:0000795 - synaptonemal complex [Evidence IDA]; GO:0000802 - transverse filament [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0019904 - protein domain specific binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007130 - synaptonemal complex formation [Evidence IEA] [Evidence IDA] codon_start : 1 exception : mismatches in translation product : synaptonemal complex protein 1 protein_id : NP_035646.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42491368 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 5 is encoded by transcript variant 5 product : nuclear receptor subfamily 1, group H, member 5 isoform 5 protein_id : NP_963916.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42491364 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : nuclear receptor subfamily 1, group H, member 5 isoform 2 protein_id : NP_963913.1

name	Nr1h5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348550 GeneID:381463 MGI:3026618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : nuclear receptor subfamily 1, group H, member 5 isoform 1 protein_id : NP_941060.1

name	5730470L24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385140 CCDS:CCDS17690.1 GeneID:66641 MGI:1913891
definition	codon_start : 1 product : hypothetical protein LOC66641 protein_id : NP_079955.1

name	Csde1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450287 GeneID:229663 MGI:92356
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : NRAS-related product : upstream of NRAS protein_id : NP_659150.1

name	Nras (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111154109 GeneID:18176 MGI:97376
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0007265 - Ras protein signal transduction [Evidence TAS]; GO:0000074 - regulation of progression through cell cycle [Evidence TAS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : neuroblastoma ras oncogene protein_id : NP_035067.2

name	Ampd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431240 GeneID:229665 MGI:88015
definition	GO_function : GO:0003876 - AMP deaminase activity [Evidence IEA] GO_process : GO:0006144 - purine base metabolism [Evidence IEA]; GO:0009168 - purine ribonucleoside monophosphate biosynthesis [Evidence IEA] codon_start : 1 note : AMP deaminase 1 product : adenosine monophosphate deaminase 1 (isoform M) protein_id : NP_001028475.2

name	Dennd2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46849718 GeneID:329727 MGI:3036254
definition	codon_start : 1 product : DENN/MADD domain containing 2C protein_id : NP_808525.1

name	Bcas2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906453 CCDS:CCDS17691.1 GeneID:68183 MGI:1915433
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : breast carcinoma amplified sequence 2 protein_id : NP_080878.2

name	Trim33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119637828 GeneID:94093 MGI:2137357
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : tripartite motif protein 33 isoform 1 protein_id : NP_444400.2

name	Trim33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119637830 GeneID:94093 MGI:2137357
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : tripartite motif protein 33 isoform 2 protein_id : NP_001073299.1

name	Syt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906485 GeneID:54524 MGI:1859544
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : synaptotagmin 6 protein_id : NP_061270.2

name	LOC100043538 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251422 GeneID:100043538
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480741.1

name	Olfml3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86439989 CCDS:CCDS17693.1 GeneID:99543 MGI:1914877
definition	codon_start : 1 product : olfactomedin-like 3 protein_id : NP_598620.2

name	Hipk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754196 GeneID:15257 MGI:1314873
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016607 - nuclear speck [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0016605 - PML body [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0019901 - protein kinase binding [Evidence IPI]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI]; GO:0042771 - DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis [Evidence IGI]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0043388 - positive regulation of DNA binding [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS] [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007224 - smoothened signaling pathway [Evidence IGI]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy function : phosphorylates homeodomain transcription factors product : homeodomain-interacting protein kinase 1 protein_id : NP_034562.1

name	Dclre1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778966 CCDS:CCDS17694.1 GeneID:140917 MGI:2156057
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006289 - nucleotide-excision repair [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : DNA cross-link repair 1B, PSO2 homolog isoform a protein_id : NP_598626.2

name	Dclre1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778907 CCDS:CCDS17695.1 GeneID:140917 MGI:2156057
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006289 - nucleotide-excision repair [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : DNA cross-link repair 1B, PSO2 homolog isoform b protein_id : NP_001020483.1

name	Ap4b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385706 CCDS:CCDS17696.1 GeneID:67489 MGI:1337130
definition	GO_component : GO:0005905 - coated pit [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence TAS] [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 exception : mismatches in translation note : AP-4 beta-4 product : adaptor-related protein complex AP-4, beta 1 protein_id : NP_080469.1

name	Ptpn22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679555 GeneID:19260 MGI:107170
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IMP]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0050852 - T cell receptor signaling pathway [Evidence IMP] codon_start : 1 note : PEST domain-enriched tyrosine phosphatase; protein tyrosine phosphatase, non-receptor type 8 product : protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein_id : NP_033005.1

name	Rsbn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906201 CCDS:CCDS17697.1 GeneID:229675 MGI:2444993
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : rosbin, round spermatid basic protein 1 protein_id : NP_766272.2

name	Phtf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305381 CCDS:CCDS17698.1 GeneID:18685 MGI:1332671
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : putative homeobox protein product : putative homeodomain transcription factor 1 protein_id : NP_038657.1

name	Magi3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527074 CCDS:CCDS17699.1 GeneID:99470 MGI:1923484
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : membrane-associated guanylate kinase-related (MAGI-3) protein_id : NP_598614.1

name	EG433634 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701496 GeneID:433634 MGI:3648205
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC433634 protein_id : NP_001013827.1

name	Lrig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299752 CCDS:CCDS17701.1 GeneID:269473 MGI:2443718
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine-rich repeats and immunoglobulin-like domains 2 protein_id : NP_001020238.1

name	Slc16a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677995 CCDS:CCDS17702.1 GeneID:20501 MGI:106013
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0015355 - monocarboxylate porter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0015711 - organic anion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : monocarboxylate transporter 1 product : solute carrier family 16, member 1 protein_id : NP_033222.1

name	7530404M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147302 GeneID:329731 MGI:3046463
definition	codon_start : 1 product : TAFA3 protein protein_id : NP_899047.1

name	Ppm1j (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114205424 CCDS:CCDS17703.1 GeneID:71887 MGI:1919137
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0015071 - protein phosphatase type 2C activity [Evidence IDA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IDA] codon_start : 1 note : protein phosphatase 2a, catalytic subunit, zeta isoform; protein phosphatase 2C zeta product : protein phosphatase 1J protein_id : NP_082258.2

name	Rhoc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680728 CCDS:CCDS17704.1 GeneID:11853 MGI:106028
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : aplysia ras-related homolog 9 (RhoC); ras homolog 9 (RhoC) product : ras homolog gene family, member C protein_id : NP_031510.1

name	Mov10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678920 GeneID:17454 MGI:97054
definition	codon_start : 1 exception : mismatches in translation product : Moloney leukemia virus 10 protein_id : NP_032645.1

name	Capza1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468887 GeneID:12340 MGI:106227
definition	GO_component : GO:0008290 - F-actin capping protein complex [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0051016 - barbed-end actin filament capping [Evidence IEA] codon_start : 1 exception : mismatches in translation note : capping protein alpha 1 product : capping protein (actin filament) muscle Z-line, alpha 1 protein_id : NP_033927.1

name	St7l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346515 CCDS:CCDS17705.1 GeneID:229681 MGI:2386964
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : tumor suppressor ST7 like product : suppression of tumorigenicity 7-like protein_id : NP_694731.1

name	LOC668452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668452
definition	number : 1 pseudo : _no_value

name	LOC668622 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668622
definition	number : 1 pseudo : _no_value

name	Gm566 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94369780 GeneID:229672 MGI:2685412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein product : gene model 566, (NCBI), transcript variant 2 transcript_id : XR_002337.1

name	EG624251 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94369831 GeneID:624251 MGI:3644007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 215 ESTs, 26 Proteins product : predicted gene, EG624251 pseudo : _no_value transcript_id : XR_002221.1

name	LOC100043572 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251423 GeneID:100043572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 375 ESTs, 3 Proteins product : similar to hCG1783679 pseudo : _no_value transcript_id : XR_034833.1

clone name	MSMg01-134P17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-512P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361M15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-122N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-051N21.T7 (MSMg01no051_n21.b1)	MSMg01-051N21.TJ (MSMg01no051_n21.g1)
ACC	AG280505	AG280506
length	1,389	1,489
length of high quality (start - end)	---	199 (116 - 314)
definition	CHROMAT_FILE: MSMg01no051_n21.b1 PHD_FILE: MSMg01no051_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:10 2005	CHROMAT_FILE: MSMg01no051_n21.g1 PHD_FILE: MSMg01no051_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:10 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGAA TACTGGAATCCCTTTTAAGCCCTAAGTTTTCATCACTGGTATCTACTACA CCACCCTTAAAAACCCCCCCTTATCCCCGCAAGTAAATGTTTATCCTTGT CTTTGTATTTGCAGCCTATCTCTATATGATCCCAAAACATTTTCTATTTC CCTCATCACTTATTAAAATTTCCCTTGTATATACCTATTGCCTTATATGA TCATTGTTCTATTTCCCCCTACAGATAGCCATACCCGCCTATCGTTTTAA CTTTTCATTACTTATGTTTATTGTTTTTTGACTCTACCTGCCTATTTCAC TGTTCATCTATACTATTGTTTTTCTACCTTTTTTACTCCCTTTGTATTTT TTTTTCTTTATATTATACCTTCTTCTTCTTTTTTCTTGCTTCTTTTTTCC TCTCCTTTTTTTTTCTCTCCCCCTTTTCTCTCTTCTTCTTTCTCCCTCAC CTAAAACATTTTCTTTTCTCTTCTCTCTCTTTTCTTTCTTTTTTCTCTCT CTTTCTCTTTCTTTTCCTCTTCTTTTCCTCTTTTTTTTTATCTTTTATTC TTTTTCTTTTCTTTTTCCTCTTTTTATTTATCTCTTCTCTCTTTTTCTTC TTTTTTTTTTTACTCTTTTTTATCTCTCTATCCTTTTTCTACTTTTTTTT TCTTTTTTTTTTTTCTCTCTTTCTTTTTTACTTTTTTTTCTTCTCCTCTC TTTCTTCTCTTTTTTCTCTTCTTATTCTCTTTTTTCTATTTTTTTCTTTT TCTTTTATCTTACTTCTCTTTCCTCTTTTTTCTCCCTCTTTTTCTTTTTT TTCCTCTCTTATTCCATTCTCTTTTCTTTCCTTTTCTTTTTTCTTTATTT CCTTCTCTTCTTTTCTTCTTATTCTCTCTTTCTCCTTCCTTCTCTTCTTT ATTTCTCTTTCTTCCTCTTCCTCTCTTCCTTTTATCTCCTTTATCCTATC TTTTTTCTTTTCTCTCTTCTCTCCTCTTTCCTTTCTTCTTCTTTCCTTCT CTTTTGTTCCTCTATCCTCCCCTCTTCTCTCTTTCTCTCTCTTTTTTCTC TTTTTTTTCTTTCTCCCTTTCTTTTTTTCTTCTTTTTTCTCTTCTCTTTC TTCCTTCTCTATTCTCCTTTCATATCTTTTCCCCCCTCTTCTTTTCGTTT CATCTTCTTCTTTTTCTCTTCATCCCTTGCTTCTCTTTATTTAATTTCTT TTTCTTTTTTTTTATCTCTTCCTTCTTTTTTCTCTTTCCTTTTCTTTCTT CTTTCTTTCATTCTTTTTCCTCTTTCTTCTTCTTCCGTCTCTATTCTTCT CTCCTCTTCTTCATTCCTTCTCCTCTCTTTCTCTCTTTA	TTTTGAGGTAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXTTATCAGTCAATGAGCCTTTTAGATTCCTTAA CCTAGTCTCAGGCACCTCTTTTTTCCCCCCTGGGAACTTTAGCTCATGAA GTAAAAAGTAGGATTGTTTCATGTAAGAAAAGTTAGAGTTTCTATTACTT TTATATTTTTTAGTTACTATATTGGGTCAAGCTAGGGTCCATGTATAGGC TGTTTTTCTTTTTGTTTTTAATTTTTTAAAAAGATTTATTTATTTATTTA TTTATTTATTTATTTATTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTATGTTTCTTTTATTTTTC CTTTTCTTTTTATTATTTTTTTTTTTTTTTTTCCTCTTTTTTCTTTTTTT TTATTTTTTTTTTTCTTTTTTTTCTTATTTTTTTCTTTCTTTTTTTTCTT TTATTTTTTTTATTTTCTTTTATTTTTTTTTTTCTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTATTTTTATTTTATTCTTTTTTTTTTTTTTTT AATTTTTTTATTCTTTTATTTTCTTTTTTTTTTATTTTATATTTTTTTTT TTTTTTTCTTATTTTTTTANTTATTTCTTTTTATTTAACTTTCTTATTTA CTTAATCTATTTCTTTTTTTTTTTTTTCTTATTTTTTATTATTTCTTTTT CTATTTTTTCCTTCTATTTCTTTTTCTATTTTTTATCTTATTTTTATTTT TCTTTTATTTTTTTTTTTTTTTTTTCTTTTTTATTTATTTTTTTTATTAT TCTTTTATTTTTTTTTACGTCTTTTTTTTTTTTATTTTCTTCTTTTTTTT ATCTTTGTGTTTTTTTTGCTTTTGTTTATTTTTTTGATATTTTATTTATT ATTTTTTTCTTATTTTTTATTTTTATTTTCTTTTGTTTTTTATTATTTTC TATTTTTTATTTTTTTTATTTTTTTTTTTTTTTTCTTACTACTATTTTTT TTTTATTTTTATTTATCTATTATATTATTTTTATCTTTTTTTTTTTTTTT TATTTCTTTTATTTTTATTTTATATTTTTATTTTATTTCTTTCTTTTCTT ATATTCTTATTTATTCTATTTTTTGTCTATTTTTTTATCTTATTTTATAT CGTCTNTTTATTTTACTTTTTATTTTGATTTATTTTTTATTTTATTTTTT TATTTTATCTTTATTCTCTTTTATCTATTTATTTTTANTTTTTATTTATT CTATTTTCTTTTACTTTTTTATCTTTTCTCTTTAATATTTTTATGTTTAT ATTATCTTTTTTTTTTTTTTACCCCTGTTTTTAATTTTGTATTATTTTAT TTTATTACCCCGTTTTTTATATATTTTTTTAGATTTTTA
quality values	Open. Hide. 6 6 8 8 10 15 13 10 8 8 8 8 8 8 8 8 8 10 10 10 8 13 13 26 27 41 37 37 37 30 28 32 27 21 18 19 19 12 12 26 26 34 48 43 43 43 43 39 37 37 41 41 37 37 46 41 21 21 11 9 9 12 12 15 11 9 13 11 10 8 10 10 10 9 9 17 19 26 33 37 37 37 41 30 24 19 9 9 9 10 11 21 13 21 21 21 21 28 28 31 21 15 9 9 9 9 11 19 13 14 17 17 16 15 12 11 9 9 8 8 8 8 15 10 11 12 12 6 6 6 8 8 9 15 21 24 13 13 9 9 10 15 19 15 10 6 6 8 10 10 11 16 25 28 17 17 17 27 25 34 16 16 12 19 19 24 29 33 34 31 29 24 20 20 28 29 19 23 17 23 17 18 11 12 21 15 15 21 24 24 30 15 15 9 9 12 13 30 30 28 28 24 24 20 23 24 26 19 22 22 26 24 28 21 19 11 14 18 25 29 32 30 30 39 37 39 30 24 21 21 16 24 19 24 24 37 30 30 28 21 18 24 14 13 15 13 16 17 15 10 13 13 24 23 30 19 19 8 10 8 8 8 12 11 15 21 15 15 13 17 16 12 12 13 13 21 11 9 8 8 8 8 8 8 10 12 9 11 11 13 18 21 19 15 13 13 10 10 10 10 10 12 12 12 12 12 11 11 11 11 11 10 13 10 10 10 10 16 12 12 12 14 15 14 10 10 10 10 10 13 12 8 8 8 6 10 8 8 9 9 10 10 10 10 10 8 8 6 6 10 8 8 8 18 12 10 10 10 8 10 8 8 6 6 8 8 10 11 12 12 16 13 10 11 13 11 10 10 9 9 9 9 9 9 10 10 6 6 8 6 6 8 8 8 6 6 8 10 9 10 10 13 12 25 21 13 11 9 9 9 9 8 8 8 10 10 9 9 10 10 10 8 8 6 6 8 8 11 9 9 13 8 11 6 6 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 13 14 11 11 10 9 11 11 12 11 11 9 8 8 8 10 13 12 10 9 9 9 9 11 11 11 10 10 8 8 8 8 10 11 10 10 8 8 6 6 8 10 10 10 8 9 8 8 8 8 10 13 8 8 8 10 10 8 8 8 8 8 8 6 8 8 8 8 9 10 10 12 12 13 8 8 8 8 8 8 10 9 9 9 13 10 8 8 8 8 8 8 8 8 8 11 12 12 8 10 7 6 8 6 12 9 9 8 8 8 8 8 8 9 10 10 10 10 10 11 9 9 13 13 10 10 12 8 8 6 6 6 6 8 8 10 8 8 8 8 13 11 14 10 13 9 9 9 9 8 10 10 12 10 10 14 8 8 8 8 8 10 8 8 8 8 8 8 8 6 6 8 6 6 6 6 8 8 6 6 8 8 10 11 11 12 9 9 9 9 9 10 10 12 13 11 15 10 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 6 8 8 8 6 6 8 8 7 9 12 12 19 10 10 6 6 8 8 9 9 9 10 12 12 12 9 11 11 12 13 10 10 13 16 19 19 14 11 10 6 6 8 8 8 8 8 8 8 8 10 10 10 8 8 8 8 8 8 11 12 11 13 9 9 9 9 10 17 12 12 12 12 15 14 10 8 10 10 10 9 14 19 26 37 26 19 10 9 9 10 19 12 10 8 8 8 8 9 8 8 8 8 8 8 9 10 10 10 10 8 7 6 6 8 15 19 28 12 10 11 14 10 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 8 13 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 7 7 10 10 10 9 9 9 9 11 11 12 12 10 8 8 8 8 10 10 8 8 8 8 9 9 8 9 8 8 8 8 8 8 9 13 15 18 22 8 10 6 6 8 8 10 10 12 13 13 18 12 10 10 6 6 8 8 10 10 8 8 6 6 8 8 8 9 8 8 10 10 7 6 8 8 8 8 10 9 9 10 14 18 18 8 8 6 6 6 7 8 8 8 8 12 11 7 7 8 8 10 11 8 8 8 12 12 10 10 8 8 8 8 8 8 8 6 10 8 8 8 10 8 8 6 6 8 8 8 8 6 6 8 8 8 8 11 13 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 8 13 10 8 6 6 8 10 10 12 13 10 9 9 11 18 16 7 8 8 13 10 10 8 8 8 8 9 8 13 8 8 8 8 8 10 9 9 9 12 9 8 8 10 10 10 9 9 9 9 10 10 10 10 16 11 12 13 26 15 15 9 9 9 12 8 8 6 6 8 6 6 8 8 8 10 8 14 11 13 10 10 8 8 8 6 6 8 8 10 9 10 11 12 12 12 10 9 7 8 8 8 10 15 13 13 9 12 11 11 11 12 12 10 12 12 8 10 8 9 9 10 15 11 9 10 8 8 8 8 8 9 10 10 12 13 12 10 10 10 9 9 10 12 8 8 6 7 10 10 10 10 10 10 12 10 9 9 9 10 8 8 6 6 8 8 6 6 8 8 8 6 6 6 7 10 8 6 6 6 6 8 10 10 8 8 13 12 10 9 10 8 8 7 8 13 12 15 12 12 11 9 3 9 7 8 8 8 8 8 8 8 8 8 10 8 8 8 10 8 6 6 8 8 8 8 8 7 7 8 8 8 10 10 9 9 9 9 8 6 6 6 6 6 6 6 6 8 6 7 8 8 8 11 8 8 8 8 8 8 8 8 8 8 10 12 10 10 10 10 9 9 9 8 8 14 10 8 8 9 9 11 12 13 13 8 10 10 10 8 8 8 11 9 9 9 11 11 13 11 8 8 8 8 8 10 10 11 11 16 11 10 10 10 8 6 6 6 7 7 9 8 10 8 8 8 10 8 8 8 11 11 9 8 6 6 10 8 8 8 9 9 9 7 7 8 8 11 7 6 6 10 10 8 8 8 8 8 8 8 8 8 8 10 8 8 9 8 8 8 8 10 8 9 10 12 9 9 8 8 8 8 6 6 8 6 8 8 9 10 10 8 8 8 8 8	Open. Hide. 8 8 17 8 6 6 6 6 6 7 6 6 6 6 6 6 6 6 6 7 12 18 15 12 9 9 9 10 12 24 23 27 22 22 24 29 23 20 10 10 15 19 23 17 12 12 24 29 37 42 42 42 48 48 57 48 48 43 43 34 25 16 12 11 12 12 14 12 13 21 21 18 14 16 14 19 19 22 28 37 27 37 28 37 32 47 37 42 37 36 42 36 44 43 48 48 43 37 39 35 28 20 21 15 10 10 13 11 12 12 18 11 11 11 16 16 21 28 33 33 39 41 36 26 26 14 14 13 25 25 37 37 32 31 34 32 32 35 39 37 37 30 30 30 37 37 43 46 48 43 42 39 35 35 39 47 43 43 33 28 28 40 43 57 57 68 57 50 47 47 47 41 41 41 41 41 42 42 41 41 41 44 44 57 44 39 39 44 46 57 47 48 48 57 57 57 47 47 47 57 57 57 68 68 68 68 68 68 57 57 57 54 54 57 57 43 41 41 50 50 50 57 57 57 52 43 43 32 27 27 20 20 20 32 32 32 32 28 28 28 32 35 43 43 59 59 34 34 17 17 17 30 30 43 43 46 57 57 57 57 44 44 40 25 25 36 44 57 57 54 48 48 48 48 47 34 30 15 14 14 15 21 30 37 34 34 28 23 22 22 28 24 37 42 47 41 37 23 23 23 34 32 57 43 43 33 30 30 37 30 30 28 24 22 19 19 23 24 20 17 13 9 9 9 8 8 8 10 10 8 8 9 10 13 13 14 11 15 8 8 8 13 15 21 31 17 17 21 18 14 20 20 26 22 17 14 12 11 11 11 11 15 16 15 10 10 9 10 14 16 10 13 9 12 12 9 10 9 9 9 13 8 10 10 10 10 13 18 22 12 12 12 12 12 15 24 24 22 22 28 21 17 9 9 8 8 16 17 17 17 12 8 8 9 8 12 10 13 10 10 11 17 11 9 9 9 9 12 12 18 19 10 11 11 10 10 10 12 20 20 15 13 8 8 8 8 8 11 8 8 8 8 10 13 10 12 11 13 10 10 8 8 6 8 6 7 12 8 15 11 9 9 9 9 9 8 11 8 8 8 8 9 9 8 8 6 6 10 10 19 11 10 10 15 11 10 10 8 8 11 11 8 8 8 12 15 20 20 24 24 33 30 19 11 10 8 15 10 12 9 18 8 8 8 8 8 8 8 15 15 8 8 8 10 10 10 10 8 8 8 13 12 20 19 22 10 8 6 6 10 10 10 11 11 13 13 24 19 15 13 6 6 8 8 8 10 12 10 8 11 11 9 9 15 15 14 17 11 17 16 16 18 24 21 28 30 30 30 30 32 33 18 18 13 13 15 14 14 14 23 19 18 18 22 23 19 19 15 17 28 22 13 13 11 15 15 10 10 6 6 8 10 10 13 6 6 6 13 15 8 6 6 8 8 9 12 8 8 8 10 10 13 13 18 18 22 16 12 15 6 6 8 8 11 18 16 10 10 8 8 8 15 15 20 15 13 7 7 8 10 13 10 11 9 19 19 20 18 17 14 12 15 8 8 8 13 13 8 11 11 11 11 10 12 12 23 22 36 35 29 21 19 11 11 11 13 10 8 8 8 8 8 12 11 12 12 13 12 3 0 3 7 6 8 8 10 10 11 17 14 17 11 11 11 11 11 14 11 9 9 11 11 10 8 8 10 10 10 8 7 8 9 9 11 12 9 18 9 11 11 19 11 11 9 9 9 17 17 15 10 10 11 16 9 9 9 10 8 9 9 9 10 12 8 10 10 9 8 8 8 7 6 11 8 12 16 18 20 11 8 8 8 8 13 13 22 13 14 10 8 10 8 8 8 8 8 8 8 9 9 9 9 9 9 10 11 8 8 8 10 10 10 10 8 8 8 8 10 6 6 8 6 8 8 8 8 8 12 11 11 10 10 12 15 15 11 11 11 18 21 28 28 28 23 23 16 19 19 30 29 24 15 12 8 10 10 13 9 9 15 15 9 9 11 15 8 8 8 15 28 32 20 10 15 12 12 9 7 6 6 8 8 9 8 13 8 9 11 10 15 19 13 14 9 8 8 8 6 8 7 8 10 23 18 28 20 16 15 11 11 11 14 12 12 14 19 19 10 8 8 8 8 13 17 11 19 18 15 17 9 9 9 9 9 13 9 9 9 10 9 13 9 11 11 12 12 8 8 8 8 13 13 9 9 8 8 8 8 8 10 14 10 12 10 9 8 8 8 8 8 13 12 9 8 10 9 10 8 11 9 9 10 15 30 25 13 8 8 8 8 8 8 9 10 13 12 12 9 10 10 12 11 13 7 7 11 10 22 8 9 9 9 8 6 8 6 8 10 21 12 10 9 9 9 10 10 10 8 8 8 8 8 8 16 16 15 13 10 10 10 13 19 18 19 13 13 6 6 8 8 13 18 26 31 22 16 11 11 13 15 12 9 6 7 6 6 6 6 6 6 6 6 8 8 8 10 10 14 16 14 13 9 10 9 9 10 15 8 8 8 8 11 15 8 6 8 7 6 8 8 8 8 6 6 6 6 6 10 12 12 13 6 6 6 8 15 13 12 10 10 10 10 12 27 32 35 32 32 13 14 8 8 8 8 8 13 19 19 15 7 7 6 10 10 13 6 9 9 13 13 8 9 8 8 8 11 10 11 8 8 8 9 8 6 6 8 8 9 15 15 15 10 18 11 10 12 9 9 10 10 11 11 10 10 8 6 8 6 6 8 13 8 8 8 10 6 6 6 8 10 13 16 10 9 7 7 8 8 8 8 8 13 22 14 10 8 6 6 7 13 7 6 8 15 15 8 10 8 8 8 6 6 6 6 3 0 3 7 6 6 8 8 9 9 9 11 8 10 9 14 11 10 10 19 15 8 8 8 8 12 10 10 8 12 12 8 12 8 9 8 11 11 11 11 11 22 22 24 9 8 8 8 8 9 10 8 8 8 8 8 13 8 8 8 8 6 6 6 6 11 8 8 8 8 8 10 8 6 13 7 7 12 10 12 8 7 3 0 3 13 13 13 8 8 8 10 6 6 10 7 9 6 7 8 8 13 8 10 8 8 15 8 8 8 8 8 10 10 8 11 8 8 8 8 10 15 9 10 10 8 8 11 6 6 6 6 10 10 13 11 10 8 8 9 9 11 21 8 8 8 8 10 8 8 8 8 8 18 18 22 10 8 8 8 9 13 19 8 8 7 6 6 7 7 7 6 7 7 11 11 12 10 11 10 10 15 12 6 10 6 6 6 6 6 6 8 9 11 11 11 18 12 8 6 6 8 6 6 7 7 6 6 6 11 11 12 7 7 7 10 15 8 6 6 11 10 10 8 8 8 6 6 6 6 7 10 10 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no051_n21.g1 MSMg01no051_n21.g1 CHROMAT_FILE:
MSMg01no051_n21.g1 PHD_FILE: MSMg01no051_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:10 2005
         (199 letters)



>mm_chr3_103738367_103738965
          Length = 599

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttttttcccccctgggaactttagctcatgaagtaaaaagtaggattgtttcatgta 60
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttttttcttccctgggaactttagctcatgaagtaaaaagtaggattgtttcatgta 260

                                                                       
Query: 61  agaaaagttagagtttctattacttttatattttttagttactatattgggtcaagctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaagttagagtttctattacttttatattttttagttactatattgggtcaagctag 320

                                                                       
Query: 121 ggtccatgtataggctgtttttctttttgtttttaattttttaaaaagatttatttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtccatgtataggctgtttttctttttgtttttaattttttaaaaagatttatttattt 380

                              
Query: 181 atttatttatttatttatt 199
           |||||||||||||||||||
Sbjct: 381 atttatttatttatttatt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information