Query= MSMg01no052_c06.b1 MSMg01no052_c06.b1 CHROMAT_FILE:
MSMg01no052_c06.b1 PHD_FILE: MSMg01no052_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:40 2005
(667 letters)
>mm_chr3_139596188_139597253
Length = 1066
Score = 1253 bits (648), Expect = 0.0
Identities = 660/664 (99%), Gaps = 1/664 (0%)
Strand = Plus / Plus
Query: 4 ggaattctattactttgcccgtattgtattcatcaatgggtgggtgcattcgttttacac 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctattactttgcctgtattgtattcatcaatgggtgggtgcattcgttttacac 263
Query: 64 ttaaaggaaggatattacacagcaccatagattctgagttaggggtcctttaaagacatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaaggaaggatattacacagcaccatagattctgagttaggggtcctttaaagacatt 323
Query: 124 tcatgaaaagcttaacctaaagtatttatgagattcaggagaggctcaaagtagatacca 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 tcatgaaaagcttaacctaaagtatttatgagattcaggagaggctcaaattagatacca 383
Query: 184 gtgcatctgtaggggcacagcagggactaaaacaaagccaagagtatcaaaactaaggac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcatctgtaggggcacagcagggactaaaacaaagccaagagtatcaaaactaaggac 443
Query: 244 tgaacacatcatagtgctcatgaagtggttttactttgtggattcttctataatgcaaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaacacatcatagtgctcatgaagtggttttactttgtggattcttctataatgcaaga 503
Query: 304 gatatgcttaatcaatagagaggcagatcattcctggaaccaatagcaatggagggaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatatgcttaatcaatagagaggcagatcattcctggaaccaatagcaatggagggaaag 563
Query: 364 tatgttgagtcaccaggttatagagcaatttgaaaattgagaaacatatccagactttat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 tatgttgagtcaccaggttatagagcaatttgaaaattgagaaacatatccagactt-at 622
Query: 424 attttggacagtaagtgcattataggaataaaaatattgatttttttctcacaagaaagt 483
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 623 attttggacagtaagtgcattataggaataaaaataatgatttttttctcacaagaaagt 682
Query: 484 tgcacataaacacaaaacttgctattattttaaggatatacctgtggatgcaattttaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcacataaacacaaaacttgctattattttaaggatatacctgtggatgcaattttaaa 742
Query: 544 acccaaactgaataattttattctatttattaattgtggatgtatgtgcaatggagtgtg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acccaaactgaataattttattctatttattaattgtggatgtatgtgcaatggagtgtg 802
Query: 604 attaggggtcagagaacaacctgtggactttcagttctttatttccactatatagattct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attaggggtcagagaacaacctgtggactttcagttctttatttccactatatagattct 862
Query: 664 ggag 667
||||
Sbjct: 863 ggag 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_c06.g1 MSMg01no052_c06.g1 CHROMAT_FILE:
MSMg01no052_c06.g1 PHD_FILE: MSMg01no052_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:40 2005
(641 letters)
>mm_chr3_139763628_139764668
Length = 1041
Score = 1149 bits (594), Expect = 0.0
Identities = 634/658 (96%), Gaps = 17/658 (2%)
Strand = Plus / Minus
Query: 1 tgagaacatctgaaaatggtctctggctgccaaattttctttttctcttacattcaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tgagaacatctgaaaatggtctctggctgccaaattttctttttctcttacattcaaagt 714
Query: 61 gaaaaagacaagaagtcttcagtagatgagaacgtagacagaaacttaagtaactcccat 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 713 gaaaaagacaagaagtcttcagtagatgtcaacgtagacagaaacttaagtaactcccat 654
Query: 121 gtctcattcatttccaaggtaaggattctgtaatacatgccggaggagcagattaaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtctcattcatttccaaggtaaggattctgtaatacatgccggaggagcagattaaagag 594
Query: 181 tgggtcgtctcatcaacccattccttagttcacttaatggctcatttaacaaatatttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgggtcgtctcatcaacccattccttagttcacttaatggctcatttaacaaatatttac 534
Query: 241 agtgctgagcactatcataaaaggcgacatactacacgttagagaacaaacatggttacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agtgctgagcactatcataaaaggcgacatactacacgttagagaacaaacatggttacc 474
Query: 301 ttatcatcccttctatcgttctaagggaatattttatctgctacaaaggggaaaaaaaga 360
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 473 ttatcatcccttctatcgttctaagggattatgttatctgctacaaaggggaaaaaaaga 414
Query: 361 aatttcaagtagaaaatgctttgtttggaaatgctgttgtaaaactaagcataaaaccgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aatttcaagtagaaaatgctttgtttggaaatgctgttgtaaaactaagcataaaaccgg 354
Query: 421 aagaaaaatactcttctaaataaatttaatgagaaattttcatcatttacaaatataaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagaaaaatactcttctaaataaatttaatgagaaattttcatcatttacaaatataaat 294
Query: 481 aatgcaaaagaaatcaacattataaattttagaggtaaaataaattgttaaaatgttaag 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 293 aatgcaaaagaaatcaacattataaattttagagggaaaataaattgttaaaatgttaag 234
Query: 541 gaagagctgctcatttgagttgaatgcccg-----------------gggggaattatcc 583
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 233 gaagagctgctcatttgagttgaatgcccggggtgggggggtggggtgggggaattatcc 174
Query: 584 tcaacacttaagctaatacataacaattctatttaaattcttctagaaaatggaagag 641
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 173 tcaacacttaagccaatacataacaattctatttaaattcctctagaaaatggaagag 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
