BAC Information

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BAC

Clone NameMSMg01-052D18
Chromosome3 (Build37)
Map Location 19,104,431 - 19,104,983
singlet/doubletsinglet
Overlap geneMtfr1
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D18.T7 (MSMg01no052_d18.b1)MSMg01-052D18.TJ (MSMg01no052_d18.g1)
ACCAG280776AG280777
length708699
length of high quality
(start - end)
552 (70 - 621)500 (68 - 567)
definitionCHROMAT_FILE: MSMg01no052_d18.b1 PHD_FILE: MSMg01no052_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005CHROMAT_FILE: MSMg01no052_d18.g1 PHD_FILE: MSMg01no052_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCC
AGAAAATTTTCCGACAGCCAACAAAACCCTTTCTTGTTGTTTTTCTTCTT
ACAAAGAAAAAAATCTTTGCAAGTAAATAAACTGACAGCACAATTTTGGA
AATTTGGGACAGAAGACAGATTAAATATTAAAATGTGAATGAAGTTATAC
AAAGAATTTATAAGGCAAAGTTACCCTAGTTTACAGAAAATATGAATAGC
ACCAACAATGATATAGAGGACTATCAGCAGTCCTCATTACATGAGGACAA
GGAAGAACTTCCAACAGAAAAATGGTTCTCACAGTTCAGAGCAACAAAAA
AGAATCAGCAGTCAAGAAAGAATATGAAAAAGTCATTATAGAACACAATC
TTTAAGCTTTTTACCTTATACATTTTAATAGGTCTTGATCTTTAAAATAA
AACCCAGAAGGCAATCGTAACTACAGCACTCAGTCATTTCTTTTCCAATC
TCCCATTTAGTCACAAGCCAAAGCTCTACTGTGATGTAGGAAACTCGGAA
TGCTATTTGTACCAATTACCTAGTCTGCAGTGACCCTCCACCTCTCTAGG
AAACAAAGTCCTGCCCAAGGAGGAAGAAAGATCGTAAAGAAAACCTTGAA
AAGGATCAGCCCAGGTCAGGGCCAATGCTTCTGTCAGCTTCCAGCAACCC
TCACTAGT
CTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAGGTGTCTTACCAAATCTGATGGCGTCTCAG
TTTGTTTGAAGTTGGCATGATTTCTCTATCCATGTGGTCATGCCATGTGT
TGGAGTGTCAATTTTTTTTAATTTAACTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTTAAACTCCAGATTTTA
TTCCCCTCATGGTCCACCCTCTGACTGTTCCATATCCCATACCTCCTCCC
TGTCCCCGTCTCCATGAGGATGATGTCCCCACTCCTCACCCCCTACCCTA
CCAGACCTCTAAACTCCCTGGGGCCTCCAGTCTCTTGAGGGCTAGGTGCA
TCTTCTCTTATTGAATCCAAACCCAGCAGTCCTCTGCTGTATATGTGTTG
GGGGCCTCATATCAGCTGGTGTATGCTGCCTGGTTGGTGGTCCAGTGTTT
GAGAGATCTCGGGGGTCCAGGTTAATTGAGACTGCTGGTCCTCATACAGG
ATCACCCTCCTCAGTTTCTTTCAGCCTTCCCCAATTCAATCACAGTGGTC
AGCAGCTTCTGTCCATTGGTTGGGTGTAAATATCTGCATCTGATTTTTTT
CAGCTGCTTGTTGGGGTCTTTCAAAGGGCATGCATGTTAGATCCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d18.b1 MSMg01no052_d18.b1 CHROMAT_FILE:
MSMg01no052_d18.b1 PHD_FILE: MSMg01no052_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:48 2005
         (552 letters)



>mm_chr3_19104231_19105183
          Length = 953

 Score = 1038 bits (537), Expect = 0.0
 Identities = 549/553 (99%), Gaps = 1/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaaaaccctttcttgttgtttttcttcttacaaag-aaaaaaatctttgcaagtaaat 59
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 753 aacaaaaccctttcttgttgtttttcttcttacaaagaaaaaaaatctttgtaagtaaat 694

                                                                       
Query: 60  aaactgacagcacaattttggaaatttgggacagaagacagattaaatattaaaatgtga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaactgacagcacaattttggaaatttgggacagaagacagattaaatattaaaatgtga 634

                                                                       
Query: 120 atgaagttatacaaagaatttataaggcaaagttaccctagtttacagaaaatatgaata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atgaagttatacaaagaatttataaggcaaagttaccctagtttacagaaaatatgaata 574

                                                                       
Query: 180 gcaccaacaatgatatagaggactatcagcagtcctcattacatgaggacaaggaagaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gcaccaacaatgatatagaggactatcagcagtcctcattacatgaggacaaggaagaac 514

                                                                       
Query: 240 ttccaacagaaaaatggttctcacagttcagagcaacaaaaaagaatcagcagtcaagaa 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 513 ttccagcagaaaaatggttctcacagttcagagcaacaaaaaagaatcagcagccaagaa 454

                                                                       
Query: 300 agaatatgaaaaagtcattatagaacacaatctttaagctttttaccttatacattttaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agaatatgaaaaagtcattatagaacacaatctttaagctttttaccttatacattttaa 394

                                                                       
Query: 360 taggtcttgatctttaaaataaaacccagaaggcaatcgtaactacagcactcagtcatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 taggtcttgatctttaaaataaaacccagaaggcaatcgtaactacagcactcagtcatt 334

                                                                       
Query: 420 tcttttccaatctcccatttagtcacaagccaaagctctactgtgatgtaggaaactcgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttttccaatctcccatttagtcacaagccaaagctctactgtgatgtaggaaactcgg 274

                                                                       
Query: 480 aatgctatttgtaccaattacctagtctgcagtgaccctccacctctctaggaaacaaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatgctatttgtaccaattacctagtctgcagtgaccctccacctctctaggaaacaaag 214

                        
Query: 540 tcctgcccaagga 552
           |||||||||||||
Sbjct: 213 tcctgcccaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space:   511106
Effective search space used:   511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)