Query= MSMg01no052_i23.b1 MSMg01no052_i23.b1 CHROMAT_FILE:
MSMg01no052_i23.b1 PHD_FILE: MSMg01no052_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:13 2005
(291 letters)
>mm_chr3_75407617_75408307
Length = 691
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Minus
Query: 1 atgattttgtagcactctgcacctggaaactgttgatgacatgacaagtagcactagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgattttgtagcactctgcacctggaaactgttgatgacatgacaagtagcactagctt 432
Query: 61 aacttacaggacattttgctgatgtccaggaggaatgtgggtcctggggcccagttactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aacttacaggacattttgctgatgtccaggaggaatgtgggtcctggggcccagttactt 372
Query: 121 aggccctaacaagtctagacctatcaacaatggaagttagagagggagtttacatgatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggccctaacaagtctagacctatcaacaatggaagttagagagggagtttacatgatgc 312
Query: 181 catagttccccagacattggctggcatatgctttagatcttttctgaattgctccatatg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catagctccccagacattggctggcatatgctttagatcttttctgaattgctccatatg 252
Query: 241 aacacaaagctaaacggaatgagggtgaactttgacttagaagactgactt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aacacaaagctaaacggaatgagggtgaactttgacttagaagactgactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no052_i23.g1 MSMg01no052_i23.g1 CHROMAT_FILE:
MSMg01no052_i23.g1 PHD_FILE: MSMg01no052_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:13 2005
(605 letters)
>mm_chr3_75298759_75299763
Length = 1005
Score = 1048 bits (542), Expect = 0.0
Identities = 590/606 (97%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 1 agtgaggtgctatccaaggaagagtgcacagggactcctatactacagttgcaaagttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaggtgctatccaaggaagagtgcacagggactcctatactacagttgcaaagttag 260
Query: 61 gaaaggatgatacagagtgacattttccatacaacagaaatcaaagggtgataaggtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggatgatacagagtgacattttccatacaacagaaatcaaagggtgataaggtaga 320
Query: 121 aggaagatcaaaaagagaag-aagaagggttatacagaggaaatggtctttgttatgata 179
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagatcaaaac-agaaggaagaagggttatacagaggaaatggtctttgttatgata 379
Query: 180 taaaaatgacagttttcttgatagatagtgccagattcgagtttagaatgtaacttgagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaaaatgacagttttcttgatagatagtgccagattcgagtttagaatgtaacttgagg 439
Query: 240 ctatgcattggaaagactgaactggtcactgttttcccagcagttcaatcctaggtagat 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctacgcattggaaagactgaactggtcactgttttcccagcagttcaatcctaggtagat 499
Query: 300 ttgaaaataacccagacacttttgaaagatccactgtttaaccccatcctagagaaatta 359
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgaaaatgacccagacagttttgaaagatccactgtttaaccccatcctagagaaatta 559
Query: 360 cataaaatctatctctgcaggtgtaattcagacatgagcagtttttaaagcaccttaaat 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cataaaatctatctctgcgggtgtaattcagacatgagcagtttttaaagcaccttaaat 619
Query: 420 atttcttgtgtgcagccacagctccgactactagattgaagggaacctgacctgatagtg 479
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct: 620 atttcttgtgtgcagccacaactccgactactaggttgaagggaacctggcctgatagtg 679
Query: 480 aggaataacaaagaagaggcggaaaggatgatgaaatagacactaactatgaccttatcc 539
||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 agggataacaaagaagaagaggaaaggacgatgaaatagacactaactatgaccttatcc 739
Query: 540 tcactactttactgtgcatgctcaaagaacaatgtaatctcttttataaacaagcactgt 599
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 tcactactttactgtgtatgctcaaagaacaatgtattctcttttataaacaagcactgt 799
Query: 600 atctca 605
||||||
Sbjct: 800 atctca 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
