BAC Information

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BAC

Clone NameMSMg01-052K18
Chromosome3 (Build37)
Map Location 91,848,058 - 91,848,485
singlet/doubletsinglet
Overlap genenone
Upstream gene4930529C04Rik, 9130204L05Rik, LOC100042463, Pglyrp3, EG619750
Downstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052K18.T7 (MSMg01no052_k18.b1)MSMg01-052K18.TJ (MSMg01no052_k18.g1)
ACCAG281099AG281100
length725728
length of high quality
(start - end)
431 (35 - 465)628 (65 - 692)
definitionCHROMAT_FILE: MSMg01no052_k18.b1 PHD_FILE: MSMg01no052_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:21 2005CHROMAT_FILE: MSMg01no052_k18.g1 PHD_FILE: MSMg01no052_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGAATCCGCGGAATTCATTGTT
TTTAACCGAAGTAAATCCAGCTGTCATGACCTCAATAAGTCATGTCATGT
CTTATTGTGCCAGGGGCTAGTATCTCACAGCACCACTTCTTATCTTCTGG
CTCCTACATTCTTTCTTCTCTTTCTTCCCTGATGTCTGAGCCTTGAGCTG
CTGATATCAATGTGTTCTTTGTGACTGAGAACCCATAGTCAATTGTTCTT
GGCATTTTGAACAGTTATGAACCCCTTCATTAACCAGACCCTCTGCAATA
AGAACCTTCTTGACCAGAGTTGAGAGCTGAACAAACCTGATGGCACCAAA
AGCCAGGGGAATAGCCCTTACCATTTTGTGAGTTATTTGCATATTTTGTA
TGTACGACCTTTATTAGATAGATGTTATACAAACCTTTTCTCCTAATCTG
CTATCTTTTCATTTTTAAAATATAATTTATGACATAAATTTATAAATTTC
AATCAAGTTCAATTTGTCTCTGTTGTGCTTTTCGGTCTTGCATCCCATAG
TTTGTTACCATGCTCTGGTGTATCTACATTCTCTCTTGTTTCCTTCCACG
ATGCCTTTAATTCTGTATTCCACCCTGTCTTTCTTTTTTACTTTAATACC
GCACACGGCATGTATATCTAAGCCTCTATTTTGTGTGTCTATATTCTCCT
GTTTCTTCTGCTATTTCTCACTCAT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAAGGATACAGAAAATGTAGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGCCAAATGGATGTACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC
CAAAACCTAGGATACCCAAGTTATAAGATACAATTTCCTAAACACATGAA
ACTCAAGAAAAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_k18.b1 MSMg01no052_k18.b1 CHROMAT_FILE:
MSMg01no052_k18.b1 PHD_FILE: MSMg01no052_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:21 2005
         (431 letters)



>mm_chr3_91847855_91848685
          Length = 831

 Score =  789 bits (408), Expect = 0.0
 Identities = 423/430 (98%), Gaps = 5/430 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtttttaaccg---aagtaaatccagctgtcatgacctcaataagtcatgt 61
           |||||||||||||||||  |   |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcattgtttttaa--gtgcaagtaaatccagctgtcatgacctcaataagtcatgt 261

                                                                       
Query: 62  catgtcttattgtgccaggggctagtatctcacagcaccacttcttatcttctggctcct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catgtcttattgtgccaggggctagtatctcacagcaccacttcttatcttctggctcct 321

                                                                       
Query: 122 acattctttcttctctttcttccctgatgtctgagccttgagctgctgatatcaatgtgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acattctttcttctctttcttccctgatgtctgagccttgagctgctgatatcaatgtgt 381

                                                                       
Query: 182 tctttgtgactgagaacccatagtcaattgttcttggcattttgaacagttatgaacccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctttgtgactgagaacccatagtcaattgttcttggcattttgaacagttatgaacccc 441

                                                                       
Query: 242 ttcattaaccagaccctctgcaataagaaccttcttgaccagagttgagagctgaacaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttcattaaccagaccctctgcaataagaaccttcttgaccagagttgagagctgaacaaa 501

                                                                       
Query: 302 cctgatggcaccaaaagccaggggaatagcccttaccattttgtgagttatttgcatatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctgatggcaccaaaagccaggggaatagcccttaccattttgtgagttatttgcatatt 561

                                                                       
Query: 362 ttgtatgtacgacctttattagatagatgttatacaaaccttttctcctaatctgctatc 421
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 ttgtatgtaggacctttattagatagatgttatacaaaccttttctcctaatctgttatc 621

                     
Query: 422 ttttcatttt 431
           ||||||||||
Sbjct: 622 ttttcatttt 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)