Query= MSMg01no052_l04.b1 MSMg01no052_l04.b1 CHROMAT_FILE:
MSMg01no052_l04.b1 PHD_FILE: MSMg01no052_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:23 2005
(636 letters)
>mm_chr3_65291908_65292944
Length = 1037
Score = 1185 bits (613), Expect = 0.0
Identities = 628/635 (98%), Gaps = 5/635 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgaaattacc---caaaagtcacttaggaattattgtaaacctacatgcccag 61
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaaat--ccatccaaaagtcacttaggaattattgtaaacctacatgcccaa 262
Query: 62 cactgaacttcaactctatctttgccccagaacaattctcccaaagtcttctcttctgct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactgaacttcaactctatctttgccccagaacaattctcccaaagtcttctcttctgct 322
Query: 122 agaagagacagtgcttagttcttcatccatgaaatgtttattgagcacttcctgtgtcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaagagacagtgcttagttcttcatccatgaaatgtttattgagcacttcctgtgtcct 382
Query: 182 agagcctgatgcagaaaactcctaggttcacacagagtgaaggacagagtgagaagaatc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agagcctgatgcagaaaactcctaggttcacacagagtgaaggacagagtgagaagaatc 442
Query: 242 cacacagatggttggagtcaacggtcactcctcttttgtccatggtctcagctttatttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacacagatggttggagtcaacggtcactcctcttttgtccatggtctcagctttatttt 502
Query: 302 caaaatatattgagtctggctgtttttcctcacttccattatcttctcctgcaacaggat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caaaatatattgagtctggctgtttttcctcacttccattatcttctcctgcaacaggat 562
Query: 362 tagtctcctaaatgttctcattggtctcactctctctcctccaaagcctattcttaatct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagtctcctaaatgttctcattggtctcactctctctcctccaaagcctattcttaatct 622
Query: 422 aacattcagagtgatgtcttaaatcatgttagaatattgttggtttgctattcagaattc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aacattcagagtgatgtcttaaatcatgttagaatattgttggtttgctattcagaattc 682
Query: 482 cagcatgactactcaggccactctacataaggccagagttcctgcaaaggcttacatggt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagcatgactactcaggccactctacataaggccagagttcctgcaaaggcttacatggt 742
Query: 542 cttccctgtgttttatgaccctgcttgcctccaaactccccttcacccactgtactttaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cttccctgtgttttatgaccctgcttgcctccaaactccccttcacccactgtactttaa 802
Query: 602 tcactcaggcctgtcttttgttccgggaatctgtt 636
|||||||||||||||||||||||| ||||||||||
Sbjct: 803 tcactcaggcctgtcttttgttcctggaatctgtt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_l04.g1 MSMg01no052_l04.g1 CHROMAT_FILE:
MSMg01no052_l04.g1 PHD_FILE: MSMg01no052_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:23 2005
(627 letters)
>mm_chr3_65362071_65363098
Length = 1028
Score = 1093 bits (565), Expect = 0.0
Identities = 586/593 (98%), Gaps = 1/593 (0%)
Strand = Plus / Minus
Query: 1 atgcaggggcagagcttggggaattggcagagtggctgaggctgctgggagcagaactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atgcaggggcagagcttggggaattggcagagtggctgaggctgctgggagcagaactgc 734
Query: 61 tcattagaaaaggccaagggaacaccctgagagctgctgcatgtgaaactgagtcagcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tcattagaaaaggccaagggaacaccctgagagctgctgcatgtgaaactgagtcagcga 674
Query: 121 gcacaacctgatcacggagtgcagaacaacagaaactgccagtcatgcgcctgggaccag 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 673 gcacaacctgatcacggagtgcagaacaacagaaactgccagtcatgagcctgggaccag 614
Query: 181 agctttgcatgctccctctgaacccaaatgccttcagtccactgactctgaagctgagt- 239
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 613 agctttgcatgctccctctgaaaccaaatgccttcagtccactgattctgaagctgagtc 554
Query: 240 cagatgaaaggttctgaacactagcccaggagtgctacctcagtctcccctgcagcagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagatgaaaggttctgaacactagcccaggagtgctacctcagtctcccctgcagcagaa 494
Query: 300 acccctcagagagaaatcaggaggaaccctccagatatcaggcctgtcatctgtgcccaa 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acccctcagagagaaatcaggaggaaccctccagatatcaggcctgtcatctgtgcccat 434
Query: 360 ggaacctgatcacagaggaggcagctgttaaaacgtgggtcagtactgaaggctgaaata 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaacctgatcacagaggagccagctgttaaaacgtgggtcagtactgaaggctgaaata 374
Query: 420 acttctggatcagagttcttgaggcttctgggaaggcctttttttctggcccctgacaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acttctggatcagagttcttgaggcttctgggaaggcctttttttctggcccctgacaac 314
Query: 480 aagccctttaataatctagggcagagggactggttgacataggcactaggtagtggaagt 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagccctttaacaatctagggcagagggactggttgacataggcactaggtagtggaagt 254
Query: 540 tggggacaggaagagaaaggagggagagacacgaatgggggaagggaggggaa 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggggacaggaagagaaaggagggagagacacgaatgggggaagggaggggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
