BAC Information

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BAC

Clone NameMSMg01-052N12
Chromosome3 (Build37)
Map Location 143,417,018 - 143,417,529
singlet/doubletsinglet
Overlap genenone
Upstream geneGtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052N12.T7 (MSMg01no052_n12.b1)MSMg01-052N12.TJ (MSMg01no052_n12.g1)
ACCAG281223AG281224
length701697
length of high quality
(start - end)
246 (66 - 311)512 (69 - 580)
definitionCHROMAT_FILE: MSMg01no052_n12.b1 PHD_FILE: MSMg01no052_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:35 2005CHROMAT_FILE: MSMg01no052_n12.g1 PHD_FILE: MSMg01no052_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCTAAACGACTCCTATTTTCAGAGATGCGGCGGAATTCAA
AAGGTTGACTGTTACCATCTTAGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCATGCTTGTAATGA
ATTATACTCTGGTAAAATGAAGAGAAAATGAATTTATTTTGCTCACAGTT
TGAGGTGTAGTCCACTATGACAGGTTGTAACAGCTGTCATGGTCAAGAAA
CAGAACAAGGAATATTTGTGTTCCTCCAGTGCAGGATCTTACCCATGGGA
ATGATACCACCCTTTTTTGGCAACTCTTCCAACCCCGACTAATTTAATCA
AGATATTTTCCACAGGCACGCTTGGAGTCAATCCCCTAGATCTTATCAGA
TTGAGAATCAAGTTGCTACATATCAGTTGCTACATATATGAGAGTATTTG
GGATATATATATATATATATATATATATATATATATATATATATACCAAA
TCCCAAGTGTGAGAGAGTTAATTCTCAAGATCACCCACAGCATGGTTGTA
TTTACTGCTCAAGATAGTTGGCATTAACCCCTGTCTATATAGATTTTTCT
TTGTACCCATATAGGCTTTCACGCTTCCCAACACTGATGCAGAAGTTGTG
TCTCTTTGGTGCTTTCCCATGAATACATGCAATTTCTTCAGGCCCGCCTT
G
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAGAACAAGTTACAAAAATAGAGCCAGCTT
ATTCTGGTAGAAGCTCAATGAGATTTTTCTAGACCTCTGCTAATCAGAAC
ATGGAGAGGCACTGGACATCGTTAAGATATTTTGACCTTTTTTTGATGTA
GGATTTTTATCTCTTTATTCTCCCAACCTTTGCCTAGACAAATCCTAACA
GCCCCTCAGAGTTCAGCTTGGAATTAATCACATTTTAAATGTTATTTTAT
TTAGTGTGCTCGGGGAGTCCACACACACATGTGCACACCAGTGGAGCTAT
CAGAGAACAACTTGCCAGAGTTGGTTCTGTCCTTCCACAACATGAGTCCC
AGGACTCAGGTTACCAGACTTGACAGCAGGAACATTCACCAGCGGAGCCA
TCCTGTTGGCTCTTATGCTTCAGCTTCAAAACAGCGTTGCGTCGCGTCGC
ATTGCTTCGGAACACTCACCAAGGTTTATTGATGCTTGTTTCTGGTCTCT
CATCCCTGATAAACTGTATTCCCCACGGAAAATGAGACATCCACCCCTCC
TGTTTGTAGCTGCTTCCCAGTTCTAGCCGACAGCAGATCACTTAGTATGC
TTGTTGACTGATTCTCACTTTGAACTTTTCATTAGTCATCGATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_n12.g1 MSMg01no052_n12.g1 CHROMAT_FILE:
MSMg01no052_n12.g1 PHD_FILE: MSMg01no052_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:35 2005
         (512 letters)



>mm_chr3_143416818_143417729
          Length = 912

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%), Gaps = 2/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagaacaagttacaaaaatagagccagcttattctggtagaagctcaatgagattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagaacaagttacaaaaatagagccagcttattctggtagaagctcaatgagattttt 260

                                                                       
Query: 61  ctagacctctgctaatcagaacatggaga-ggcactggacatcgttaagatattttgacc 119
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 261 ctagacctctgctaatcagaacatgga-atggcactggacatcgttaagatattttgacc 319

                                                                       
Query: 120 tttttttgatgtaggatttttatctctttattctcccaacctttgcctagacaaatccta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttttttgatgtaggatttttatctctttattctcccaacctttgcctagacaaatccta 379

                                                                       
Query: 180 acagcccctcagagttcagcttggaattaatcacattttaaatgttattttatttagtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acagcccctcagagttcagcttggaattaatcacattttaaatgttattttatttagtgt 439

                                                                       
Query: 240 gctcggggagtccacacacacatgtgcacaccagtggagctatcagagaacaacttgcca 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 gctcggggagtccacacacacatgtgcacaccagtggagctgtcagagaacaacttgcca 499

                                                                       
Query: 300 gagttggttctgtccttccacaacatgagtcccaggactcaggttaccagacttgacagc 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacttggttctgtccttccacaacatgagtcccaggactcaggttaccagacttgacagc 559

                                                                       
Query: 360 aggaacattcaccagcggagccatcctgttggctcttatgcttcagcttcaaaacagcgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggaacattcaccagcggagccatcctgttggctcttatgcttcagcttcaaaacagcgt 619

                                                                       
Query: 420 tgcgtcgcgtcgcattgcttcggaacactcaccaaggtttattgatgcttgtttctggtc 479
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcgttgcgtcgcattgcttcggaacactcaccaaggtttattgatgcttgtttctggtc 679

                                            
Query: 480 tctcatccctgataaactgtattccccacggaa 512
           |||||||||||||||||||||||||||||||||
Sbjct: 680 tctcatccctgataaactgtattccccacggaa 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)