ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATATGAACTTAGAGTAACATCTGCATGAAAAGGACTAGATGAAACTT
TGAATATTAAAGCTGTATATGAAGTGGATGACACACCTACTGTATTTGTC
ACAGTGGCAGGCAGAAGCAATGGACTAGGCCCAGTGATATCTGGTAATAC
TATGTATCCAGCTATCAGCTGTCCCTCAATCAAATCAGACTGGTTGCTCA
GGATGTGTGGTCATCTCTGACTACCCAGTGATCTTGACTGTTCATTTAGT
GTTTGGATAATTCTGTGTGGAGGTTTTCTTTTCTGATCCCACTTATTTAG
TTTTCTATAGGCTTCTTGTACATTTATTGCCATCTCTTTCTGTAGATTGG
GGAAGTTTTCTTCTATTATTTTGTTGAAGACATTTTCAGGTCCTTTGAGC
TGGGAATCTTCATTCTCTATTCTGATTATCCTTAGATTATCTTTTCACTG
TGTCTTGAATTTCCTGGATGCTTTGGGTTAGGAGGTATTTTTGTTTGTTT
GGTTGGTTTTGTTTTGAATTTTCTTTCACAGTTGTGTCAATCTTTTCTAC
TGTATCTTCTATATCTGAGATTCTCTACTTTGTCTCTTTTATTCTGTTGG
GAATATTTACACCTGAAATTCCTAACCTCTTTCCTAGTTTTTTCATTTCC
AGG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCACCTGGAGATCCATCCCATATGAACTC
ACCAAACCCAGACACTATTGTGGATGCCAAGAAGTGCTTGCTGACAGTAG
CCTGATATAGCTGTCTCTATAGAGGGGCTCTGCCAGAGCCTAAGAAATAC
AGAGGCAAATGTTCACAGCCAACCATTGGAATGGGGTCCTCAATAGAGGA
GTTAGAGAAAAAACTGAAGGAGCTGAAGTGGTTTGCAACTCATTAGGAAG
AACCACAATATCAACCAACCAGAGTTCCCAGGAACTAAACCATCAACCAA
GGAGTACACATGGTCCCATGGCTCCAGCCACATATGTAGCAGAGGATGGC
CTTGTCTGGCACCAATGGAAGGAGAGACCCTTGCTACTATGAAGGCTTGA
GGCCCCAATGTAGGGGAATTTGAGGGCAGGAAAATGGGAAAGAGTGTGTG
GATTGGGGAACACAAACATAGAAGCAGGGGGAAGGGTATAGAACAGGGGG
TTTCTGGTGGGGGATGACTGGGAAATGGGATAACATTTGAAACATAAATA
AAGAAAATATCTAATAAAAATCTGACTGTATCTGTGAACAATAAAGAACA
CATTCGTCTAGTAATTATCACAGAGAGTAAGCCACATGCATGCACATTTT
A

Query= MSMg01no052_o04.b1 MSMg01no052_o04.b1 CHROMAT_FILE:
MSMg01no052_o04.b1 PHD_FILE: MSMg01no052_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:38 2005
         (661 letters)



>mm_chr3_15841577_15842637
          Length = 1061

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatatgaacttagagtaacatctgcatgaaaaggactagatgaaactttgaat 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 ggaattccatatgaacttagagtaacatctgcatgaaaaggaccagatgaaactttgaat 385

                                                                       
Query: 64  attaaagctgtatatgaagtggatgacacacctactgtatttgtcacagtggcaggcaga 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 attaaagctgtatatgaagtggatgacatacctactgtatttgtcacagtggcaggcaga 325

                                                                       
Query: 124 agcaatggactaggcccagtgatatctggtaatactatgtatccagctatcagctgtccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaatggactaggcccagtgatatctggtaatactatgtatccagctatcagctgtccc 265

                                                                       
Query: 184 tcaatcaaatcagactggttgctcaggatgtgtggtcatctctgactacccagtgatctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaatcaaatcagactggttgctcaggatgtgtggtcatctctgactacccagtgatctt 205

                                                                       
Query: 244 gactgttcatttagtgtttggataattctgtgtggaggttttcttttctgatcccactta 303
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcctgttcatttagtgtttggataattctgtgtggaggttttcttttctgatcccactta 145

                                                                       
Query: 304 tttagttttctataggcttcttgtacatttattgccatctctttctgtagattggggaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tttagttttctataggcttcttgtacatttattgccatctctttctgtagattggggaag 85

                                                                       
Query: 364 ttttcttctattattttgttgaagacattttcaggtcctttgagctgggaatcttcattc 423
           |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 84  tttttttctattattttattgaagacattttcaggtcctttgagctgggaatgttcattc 25

                                   
Query: 424 tctattctgattatccttagatta 447
           ||||||||||||||||||||||||
Sbjct: 24  tctattctgattatccttagatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)