BAC Information

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BAC

Clone NameMSMg01-053C17
Chromosome3 (Build37)
Map Location 74,748,528 - 74,748,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459
Downstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C17.T7 (MSMg01no053_c17.b1)MSMg01-053C17.TJ (MSMg01no053_c17.g1)
ACCAG281462
length701697
length of high quality
(start - end)
228 (73 - 300)---
definitionCHROMAT_FILE: MSMg01no053_c17.b1 PHD_FILE: MSMg01no053_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:00 2005CHROMAT_FILE: MSMg01no053_c17.g1 PHD_FILE: MSMg01no053_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTTTCCTAGGTGCCGCGGNAA
TCAAATATGTTGCCTCACTGACGTGAAGCTATTATTCCCCTGTCTCCTTG
TCACTCTGTTCACCTGTGCCACCAGTTAAATTTTACCTCATTTCCTCTAC
TTTTCAGCTGACAGAAACAATGAAGGCAGGAACCTGTAGTCTTGATTGTT
TCCAACATGACATTTTGTGTTGGTAACTTTATTAGTTAATCTCTTTGAAT
TTTTTAACACTGGAGATAATTCTGGTGGTTACTTTCATATGTTTGTTCAG
CAATGTTTGACGTGTTTTATAATTTTTNCAGAACGNACATATATGAAAGC
TTCCTGTTCTTTTTACCCATTAACGTTATCCTGCAGTTACCATCATCTTT
CCTATTTACTCACATATTTCTTTCTTACAGTTGAAATGTGTATTTACCCC
ATTTACTGATAGAATATAATAAATTATAATATTATCTTCATGGACATTCT
GATTTTAGTAGCTTTTCATTTAAACGTTTTCATTACAAGATAAATTTCAC
ACTTTATACATGCATGTATGTATATATTACAATGTTCCTATCACAATAAT
TTTGATAGCCTATGAATTAGATGAACCCACCTTCTTCAAAAAGGATGCAG
ATCTTTTTTTTTTTTTTTGTTTAATCCATGAACCCTGACTCCTCTTGTGG
C
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c17.b1 MSMg01no053_c17.b1 CHROMAT_FILE:
MSMg01no053_c17.b1 PHD_FILE: MSMg01no053_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:00 2005
         (228 letters)



>mm_chr3_74748328_74748955
          Length = 628

 Score =  358 bits (185), Expect = e-103
 Identities = 218/233 (93%), Gaps = 10/233 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaagctattattcccctgtctccttgtcactctgttcacctgtgccaccagttaaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 428 gtgaagctattattcccctgtctccttgtcactctgttcacctgtgtcaccagttaaatt 369

                                                                       
Query: 61  ttacctcatttcctctacttttcagctgacagaaacaatgaaggcaggaacctgtagtct 120
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 ttacctcatttcctctaattttcagctgacagaaacaataaaggcaggaacctgtagtct 309

                                                                       
Query: 121 tgattgtttc-caacatgacattttgtgttggtaactttattagttaatctctttgaa-- 177
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 308 tgattg-ttcacaacatgacattttgtgttggtaactttattagttaatctctttgaagc 250

                                                                
Query: 178 --ttttttaacactggagataattctggtggttactttcatatgtttgttcag 228
                 |||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 249 ac----ttaacactggatctaattctggtggttactttcatatgtttgttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)